Patient Referral Patterns and the Spread of Hospital-Acquired Infections through National Health Care Networks. - Tjibbe Donker; Jacco Wallinga; Hajo Grundmann (PLoS Comput. Biol., 2010)

Estimation of Vaccine Efficacy and Critical Vaccination Coverage in Partially Observed Outbreaks. - Michiel van Boven; Wilhelmina L. M. Ruijs; Jacco Wallinga; Philip D. O'Neill; Susan Hahné (PLoS Comput. Biol., 2013)

Spatiotemporal Analysis of the 2014 Ebola Epidemic in West Africa. - Jantien A. Backer; Jacco Wallinga (PLoS Comput. Biol., 2016)

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks. - Don Klinkenberg; Jantien A. Backer; Xavier Didelot; Caroline Colijn; Jacco Wallinga (PLoS Comput. Biol., 2017)

Practical considerations for measuring the effective reproductive number, Rt. - Katelyn M. Gostic; Lauren McGough; Edward B. Baskerville; Sam Abbott; Keya Joshi; Christine Tedijanto; Rebecca Kahn; Rene Niehus; James A. Hay; Pablo M. De Salazar; Joel Hellewell; Sophie Meakin; et al. (PLoS Comput. Biol., 2020)

Correction: Practical considerations for measuring the effective reproductive number, Rt. - Katelyn M. Gostic; Lauren McGough; Edward B. Baskerville; Sam Abbott; Keya Joshi; Christine Tedijanto; Rebecca Kahn; Rene Niehus; James A. Hay; Pablo M. De Salazar; Joel Hellewell; Sophie Meakin; et al. (PLoS Comput. Biol., 2021)

Optimal vaccine allocation for COVID-19 in the Netherlands: A data-driven prioritization. - Fuminari Miura; Ka Yin Leung; Don Klinkenberg; Kylie E. C. Ainslie; Jacco Wallinga (PLoS Comput. Biol., 2021)

EpiLPS: A fast and flexible Bayesian tool for estimation of the time-varying reproduction number. - Oswaldo Gressani; Jacco Wallinga; Christian L. Althaus; Niel Hens; Christel Faes (PLoS Comput. Biol., 2022)