Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology. - Jacek Puchalka; Matthew A. Oberhardt; Miguel Godinho; Agata Bielecka; Daniela Regenhardt; Kenneth N. Timmis; Jason A. Papin; Vítor A. P. Martins dos Santos (PLoS Comput. Biol., 2008)

Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis. - Matthew A. Oberhardt; Jacek Puchalka; Vítor A. P. Martins dos Santos; Jason A. Papin (PLoS Comput. Biol., 2011)

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida. - Andreas Kremling; Katharina Pflüger-Grau; Max Chavarría; Jacek Puchalka; Vítor A. P. Martins dos Santos; Victor de Lorenzo (BMC Syst. Biol., 2012)