Computational chemistry network services and user interfacing. - Ad H. M. Thiers; Jack A. M. Leunissen; Todd M. Miller; G. Schaftenaar; Jan H. Noordik (J. Chem. Inf. Comput. Sci., 1993)

USAGE: a web-based approach towards the analysis of SAGE data. - Antoine H. C. van Kampen; Barbera D. C. van Schaik; Erwin Pauws; E. M. C. Michiels; J. M. Ruijter; H. N. Caron; Rogier Versteeg; S. H. Heisterkamp; Jack A. M. Leunissen; Frank Baas; M. van der Mee (Bioinform., 2000)

EXProt - a database for EXPerimentally verified Protein functions. - Björn M. Ursing; Frank H. J. van Enckevort; Jack A. M. Leunissen; Roland J. Siezen (Silico Biol., 2001)

EXProt: a database for proteins with an experimentally verified function. - Björn M. Ursing; Frank H. J. van Enckevort; Jack A. M. Leunissen; Roland J. Siezen (Nucleic Acids Res., 2002)

Chimera: construction of chimeric sequences for phylogenetic analysis. - Jack A. M. Leunissen (Bioinform., 2003)

Evolution of web services in bioinformatics. - Pieter B. T. Neerincx; Jack A. M. Leunissen (Briefings Bioinform., 2005)

GeneSeeker: extraction and integration of human disease-related information from web-based genetic databases. - Marc A. van Driel; K. Cuelenaere; P. P. C. W. Kemmeren; Jack A. M. Leunissen; Han G. Brunner; Gert Vriend (Nucleic Acids Res., 2005)

Testing statistical significance scores of sequence comparison methods with structure similarity. - Tim Hulsen; Jacob de Vlieg; Jack A. M. Leunissen; Peter M. A. Groenen (BMC Bioinform., 2006)

QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species. - Jifeng Tang; Ben Vosman; Roeland E. Voorrips; C. Gerard van der Linden; Jack A. M. Leunissen (BMC Bioinform., 2006)

TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure. - Blaise T. F. Alako; Daphne Rainey; Harm Nijveen; Jack A. M. Leunissen (Nucleic Acids Res., 2006)

A Protein Classification Benchmark collection for machine learning. - Paolo Sonego; Mircea Pacurar; Somdutta Dhir; Attila Kertész-Farkas; András Kocsor; Zoltán Gáspári; Jack A. M. Leunissen; Sándor Pongor (Nucleic Acids Res., 2007)

Primer3Plus, an enhanced web interface to Primer3. - Andreas Untergasser; Harm Nijveen; Xiangyu Rao; Ton Bisseling; René Geurts; Jack A. M. Leunissen (Nucleic Acids Res., 2007)

Large-scale identification of polymorphic microsatellites using an in silico approach. - Jifeng Tang; Samantha J. Baldwin; Jeanne M. E. Jacobs; C. Gerard van der Linden; Roeland E. Voorrips; Jack A. M. Leunissen; Herman van Eck; Ben Vosman (BMC Bioinform., 2008)

SEQATOMS: a web tool for identifying missing regions in PDB in sequence context. - Bernd W. Brandt; Jaap Heringa; Jack A. M. Leunissen (Nucleic Acids Res., 2008)

ProGMap: an integrated annotation resource for protein orthology. - Arnold Kuzniar; Ke Lin; Ying He; Harm Nijveen; Sándor Pongor; Jack A. M. Leunissen (Nucleic Acids Res., 2009)

e-BioFlow: Improving Practical Use of Workflow Systems in Bioinformatics. - Ingo H. C. Wassink; Matthijs Ooms; Pieter B. T. Neerincx; Gerrit C. van der Veer; Han Rauwerda; Jack A. M. Leunissen; Timo M. Breit; Anton Nijholt; Paul E. van der Vet (ITBAM, 2010)

A Comparison of Database Systems for XML-Type Data. - Judith E. Risse; Jack A. M. Leunissen (Silico Biol., 2010)

An evaluation of the performance of three semantic background knowledge sources in comparative anatomy. - Ernest A. A. van Ophuizen; Jack A. M. Leunissen (J. Integr. Bioinform., 2010)

MADMAX - Management and analysis database for multiple omics experiments. - Ke Lin; Harrie Kools; Philip J. de Groot; Anand K. Gavai; Ram K. Basnet; Feng Cheng; Jian Wu; Xiaowu Wang; Arjen Lommen; Guido J. E. K. Hooiveld; Guusje Bonnema; Richard G. F. Visser; et al. (J. Integr. Bioinform., 2011)

Ten Simple Rules for Developing a Short Bioinformatics Training Course. - Allegra Via; Javier De Las Rivas; Teresa K. Attwood; David Landsman; Michelle D. Brazas; Jack A. M. Leunissen; Anna Tramontano; Maria Victoria Schneider (PLoS Comput. Biol., 2011)

eBiomics - A Website Promoting Good Practices and Specific Methods for using Bioinformatics Resources. - Frédérique Lisacek; Patrick Koks; Pascale Berthault; Grégoire Rossier; Guy Bottu; Jacques van Helden; Jean Sylvestre; Jean-Pierre Kraehenbuhl; Jack A. M. Leunissen (BIOINFORMATICS, 2012)

ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins. - Hong Luo; Ke Lin; Audrey David; Harm Nijveen; Jack A. M. Leunissen (Nucleic Acids Res., 2012)

Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks. - Arnold Kuzniar; Somdutta Dhir; Harm Nijveen; Sándor Pongor; Jack A. M. Leunissen (Bioinform., 2015)