Molecular Dynamics Calculations of the Electrostatic Properties of Tubulin and Their Consequences for Microtubules. - Jack A. Tuszynski; E. J. Carpenter; E. Crawford; J. A. Brown; W. Malinski; J. M. Dixon (ICMENS, 2003)

Molecular dynamics simulations of tubulin structure and calculations of electrostatic properties of microtubules. - Jack A. Tuszynski; J. A. Brown; E. Crawford; E. J. Carpenter; M. L. A. Nip; J. M. Dixon; Miljko V. Sataric (Math. Comput. Model., 2005)

Free Energy Calculations on the Binding of Colchicine and Its Derivatives with the α/β-Tubulin Isoforms. - Jonathan Y. Mane; Mariusz Klobukowski; J. Torin Huzil; Jack A. Tuszynski (J. Chem. Inf. Model., 2008)

Information processing mechanisms in microtubules at physiological temperature: Model predictions for experimental tests. - Travis J. A. Craddock; Catherine Beauchemin; Jack A. Tuszynski (Biosyst., 2009)

Identification and Characterization of an Intermediate Taxol Binding Site Within Microtubule Nanopores and a Mechanism for Tubulin Isotype Binding Selectivity. - Holly Freedman; J. Torin Huzil; Tyler Luchko; Richard F. Luduena; Jack A. Tuszynski (J. Chem. Inf. Model., 2009)

Using Entropy Leads to a Better Understanding of Biological Systems. - Chih-Yuan Tseng; Jack A. Tuszynski (Entropy, 2010)

Virtual Screening: An Overview on Methods and Applications. - Khaled H. Barakat; Jonathan Y. Mane; Jack A. Tuszynski (Handbook of Research on Computational and Systems Biology, 2011)

Simulation of the effects of microtubules in the cortical rotation of amphibian embryos in normal and zero gravity. - Comron Nouri; Jack A. Tuszynski; Mark W. Wiebe; Richard Gordon 001 (Biosyst., 2012)

An investigation of the plausibility of stochastic resonance in tubulin dimers. - Aditya A. Saha; Travis J. A. Craddock; Jack A. Tuszynski (Biosyst., 2012)

A mean field Ising model for cortical rotation in amphibian one-cell stage embryos. - Jack A. Tuszynski; Richard Gordon 001 (Biosyst., 2012)

Cytoskeletal Signaling: Is Memory Encoded in Microtubule Lattices by CaMKII Phosphorylation? - Travis J. A. Craddock; Jack A. Tuszynski; Stuart R. Hameroff (PLoS Comput. Biol., 2012)

Self-organization and entropy reduction in a living cell. - Paul C. W. Davies; Elisabeth Rieper; Jack A. Tuszynski (Biosyst., 2013)

Detailed Computational Study of the Active Site of the Hepatitis C Viral RNA Polymerase to Aid Novel Drug Design. - Khaled H. Barakat; John Law; Alessio Prunotto; Wendy C. Magee; David H. Evans 002; D. Lorne Tyrrell; Jack A. Tuszynski; Michael Houghton (J. Chem. Inf. Model., 2013)

Maximum Entropy in Drug Discovery. - Chih-Yuan Tseng; Jack A. Tuszynski (Entropy, 2014)

Rational Drug Design: One Target, Many Paths to It. - Khaled H. Barakat; Michael Houghton; D. Lorne Tyrrell; Jack A. Tuszynski (Int. J. Comput. Model. Algorithms Medicine, 2014)

Biological wires, communication systems, and implications for disease. - Douglas E. Friesen; Travis J. A. Craddock; Aarat P. Kalra; Jack A. Tuszynski (Biosyst., 2015)

The use of compressive sensing and peak detection in the reconstruction of microtubules length time series in the process of dynamic instability. - Majid Mahrooghy; Shantia Yarahmadian; Vineetha Menon; Vahid Rezania; Jack A. Tuszynski (Comput. Biol. Medicine, 2015)

Boolean gates on actin filaments. - Stefano Siccardi; Jack A. Tuszynski; Andrew Adamatzky (CoRR, 2015)

A Refined Model of the HCV NS5A Protein Bound to Daclatasvir Explains Drug-Resistant Mutations and Activity against Divergent Genotypes. - Khaled H. Barakat; Anwar Anwar-Mohamed; Jack A. Tuszynski; Morris J. Robins; D. Lorne Tyrrell; Michael Houghton (J. Chem. Inf. Model., 2015)

Detailed Per-residue Energetic Analysis Explains the Driving Force for Microtubule Disassembly. - Ahmed T. Ayoub; Mariusz Klobukowski; Jack A. Tuszynski (PLoS Comput. Biol., 2015)

Josephin Domain Structural Conformations Explored by Metadynamics in Essential Coordinates. - Marco Agostino Deriu; Gianvito Grasso; Jack A. Tuszynski; Diego Gallo; Umberto Morbiducci; Andrea Danani (PLoS Comput. Biol., 2016)

Integration of intracellular signaling: Biological analogues of wires, processors and memories organized by a centrosome 3D reference system. - Nadezhda Barvitenko; Alfons Lawen; Muhammad Aslam 005; Antonella Pantaleo; Carlota Saldanha; Elisaveta Skverchinskaya; Marco Regolini; Jack A. Tuszynski (Biosyst., 2018)

Nonlinear calcium ion waves along actin filaments control active hair-bundle motility. - Jack A. Tuszynski; Miljko V. Sataric; Dalibor L. Sekulic; Bogdan M. Sataric; Slobodan Zdravkovic (Biosyst., 2018)

Towards Cytoskeleton Computers. A proposal. - Andrew Adamatzky; Jack A. Tuszynski; Joerg Pieper; Dan V. Nicolau; Rossalia Rinalndi; Georgios Ch. Sirakoulis; Victor Erokhin; Joerg Schnauss; David M. Smith (CoRR, 2018)

Towards Cytoskeleton Computers. A Proposal. - Andrew Adamatzky; Jack A. Tuszynski; Joerg Pieper; Dan V. Nicolau; Rosaria Rinaldi; Georgios Ch. Sirakoulis; Victor Erokhin; Jörg Schnauß; David M. Smith (From Parallel to Emergent Computing, 2019)

Molecular orbitals of delocalized electron clouds in neuronal domains. - Roman R. Poznanski; Lleuvelyn A. Cacha; Ahmad Zubaidi Abdul Latif; Sheikh Hussain Salleh; Jalil Ali; Preecha P. Yupapin; Jack A. Tuszynski; Tengku M. Ariff (Biosyst., 2019)

How signals of calcium ions initiate the beats of cilia and flagella. - Miljko V. Sataric; Tomas Nemes; Dalibor L. Sekulic; Jack A. Tuszynski (Biosyst., 2019)

Actin Networks Voltage Circuits. - Stefano Siccardi; Andrew Adamatzky; Jack A. Tuszynski; Florian Huber; Jörg Schnauß (CoRR, 2019)

Non-Equilibrium Quantum Brain Dynamics: Super-Radiance and Equilibration in 21 Dimensions+. - Akihiro Nishiyama; Shigenori Tanaka; Jack A. Tuszynski (Entropy, 2019)

A search for the physical basis of the genetic code. - S. Arbabi Moghadam; Mariusz Klobukowski; Jack A. Tuszynski (Biosyst., 2020)

Testing amino acid-codon affinity hypothesis using molecular docking. - S. Arbabi Moghadam; Jordane Preto; Mariusz Klobukowski; Jack A. Tuszynski (Biosyst., 2020)

Non-Equilibrium Quantum Electrodynamics in Open Systems as a Realizable Representation of Quantum Field Theory of the Brain. - Akihiro Nishiyama; Shigenori Tanaka; Jack A. Tuszynski (Entropy, 2020)

Editorial: Waves in fertilization, cell division and embryogenesis. - Luigia Santella; Richard Gordon 001; Zhan Chen; Jack A. Tuszynski (Biosyst., 2021)

Modeling the structure of the frameshift-stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers. - Sara Ibrahim Omar; Meng Zhao; Rohith Vedhthaanth Sekar; Sahar Arbabi Moghadam; Jack A. Tuszynski; Michael T. Woodside (PLoS Comput. Biol., 2021)

In Silico Analysis of the Multi-Targeted Mode of Action of Ivermectin and Related Compounds. - Maral Aminpour; Marco Cannariato; Jordane Preto; M. Ehsan Safaeeardebili; Alexia Moracchiato; Domiziano Doria; Francesca Donato; Eric Adriano Zizzi; Marco Agostino Deriu; David E. Scheim; Alessandro D. Santin; Jack A. Tuszynski (Comput., 2022)

The Effect of the Protein Synthesis Entropy Reduction on the Cell Size Regulation and Division Size of Unicellular Organisms. - Mohammad Razavi; Seyed Majid Saberi Fathi; Jack A. Tuszynski (Entropy, 2022)

Quantum Brain Dynamics and Virtual Reality. - Akihiro Nishiyama; Shigenori Tanaka; Jack A. Tuszynski (Biosyst., 2024)

A comprehensive primer and review of PROTACs and their In Silico design. - Jacopo Zattoni; Paola Vottero; Gea Carena; Chiara Uliveto; Giulia Pozzati; Benedetta Morabito; Ebenezea Gitari; Jack A. Tuszynski; Maral Aminpour (Comput. Methods Programs Biomed., 2025)