ProbeDesigner: for the design of probesets for branched DNA (bDNA) signal amplification assays. - Steven Bushnell; J. Budde; T. Catino; Jack Cole; A. Derti; R. Kelso; M. L. Collins; G. Molino; P. Sheridan; J. Monahan; M. Urdea (Bioinform., 1999)

Security in Storage. - Jim Hughes; Jack Cole (Computer, 2003)

GECKO: a complete large-scale gene expression analysis platform. - Joachim Theilhaber; Anatoly Ulyanov; Anish Malanthara; Jack Cole; Dapeng Xu; Robert Nahf; Michael Heuer; Christoph Brockel; Steven Bushnell (BMC Bioinform., 2004)

Raising the Bar. - Jack Cole (Computer, 2004)

Security in Storage: A Call for Participation. - Jack Cole (Computer, 2005)

Incident Management and Forensics Put in Context (Invited). - Jack Cole (IMF, 2008)

Search and visualization of gene-drug-disease interactions for pharmacogenomics and precision medicine research using GeneDive. - Mike Wong 001; Paul Previde; Jack Cole; Brook Thomas; Nayana Laxmeshwar; Emily K. Mallory; Jake Lever; Dragutin Petkovic; Russ B. Altman; Anagha Kulkarni 001 (J. Biomed. Informatics, 2021)

OmniGenBench: Automating Large-scale in-silico Benchmarking for Genomic Foundation Models. - Heng Yang; Jack Cole; Ke Li (CoRR, 2024)

Evolutionary multitasking with evolutionary trend alignment in subdomains. - Wenhao Du; Zhigang Ren; Jack Cole; Xiaotian Zou; Chaowen Wang (Expert Syst. Appl., 2025)

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking. - Heng Yang 008; Jack Cole; Yuan Li; Renzhi Chen; Geyong Min; Ke Li 001 (CoRR, 2025)

Don't throw the baby out with the bathwater: How and why deep learning for ARC. - Jack Cole; Mohamed Osman (CoRR, 2025)