Examining the significance of fingerprint-based classifiers. - Brian T. Luke; Jack R. Collins (BMC Bioinform., 2008)

Quick2Insight: A user-friendly framework for interactive rendering of biological image volumes. - Yanling Liu; Curtis Lisle; Jack R. Collins (BioVis, 2011)

Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes. - Regina Z. Cer; Kevin H. Bruce; Uma Mudunuri; Ming Yi; Natalia Volfovsky; Brian T. Luke; Albino Bacolla; Jack R. Collins; Robert M. Stephens (Nucleic Acids Res., 2011)

Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools. - Regina Z. Cer; Duncan E. Donohue; Uma Mudunuri; Nuri A. Temiz; Michael A. Loss; Nathan J. Starner; Goran N. Halusa; Natalia Volfovsky; Ming Yi; Brian T. Luke; Albino Bacolla; Jack R. Collins; et al. (Nucleic Acids Res., 2013)

AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes. - Hue Vuong; Anney Che; Sarangan Ravichandran; Brian T. Luke; Jack R. Collins; Uma S. Mudunuri (Bioinform., 2015)

Integration of Deep Learning and Graph Theory for Analyzing Histopathology Whole-slide Images. - Hyun Jung; Christian Suloway; Tianyi Miao; Elijah F. Edmondson; David R. Morcock; Claire Deleage; Yanling Liu; Jack R. Collins; Curtis Lisle (AIPR, 2018)

AVIA 3.0: interactive portal for genomic variant and sample level analysis. - Hue V. Reardon; Anney Che; Brian T. Luke; Sarangan Ravichandran; Jack R. Collins; Uma S. Mudunuri (Bioinform., 2021)