Exploring Protein Functional Relationships Using Genomic Information and Data Mining Techniques. - Jack Y. Yang; Mary Qu Yang; Okan K. Ersoy (ICANN, 2003)

Sequential bifurcation Approach to Learning protein Functional Classes. - Mary Qu Yang; Okan K. Ersoy; Jack Y. Yang (Advances in Bioinformatics and Its Applications, 2005)

IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences. - Mary Qu Yang; Jack Y. Yang (BIBE, 2006)

Assessing protein function using a combination of supervised and unsupervised learning. - Jack Y. Yang; Mary Qu Yang (BIBE, 2006)

Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure. - Mary Qu Yang; Jack Y. Yang (BIOCOMP, 2006)

Learning from Sequences with Determining Correlation between Transmembrane and Protein Disorder. - Jack Y. Yang; Mary Qu Yang (BIOCOMP, 2006)

Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor Classification. - Hualong Bu; Guo-Zheng Li 001; Xue-Qiang Zeng; Jack Y. Yang; Mary Qu Yang (BIBE, 2007)

Ensemble of Probabilistic Neural Networks for Protein Fold Recognition. - Yuehui Chen; Xueqin Zhang; Mary Qu Yang; Jack Y. Yang (BIBE, 2007)

Intrinsically Disordered Proteins: Predictions and Applications. - A. Keith Dunker; Christopher J. Oldfield; Jingwei Meng; Pedro Romero; Jack Y. Yang; Zoran Obradovic; Vladimir N. Uversky (BIBE, 2007)

Intrinsically Disordered Proteins: An Update. - A. Keith Dunker; Christopher J. Oldfield; Jingwei Meng; Pedro Romero; Jack Y. Yang; Zoran Obradovic; Vladimir N. Uversky (BIBE, 2007)

Support Vector Regression with Feature Selection for the Multivariate Calibration of Spectrofluorimetric Determination of Aromatic Amino Acids. - Guo-Zheng Li 001; Hao-Hua Meng; Mary Qu Yang; Jack Y. Yang (BIBE, 2007)

Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor Classification. - Guo-Zheng Li 001; Xue-Qiang Zeng; Jack Y. Yang; Mary Qu Yang (BIBE, 2007)

An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. - Mehdi Pirooznia; Arun Rawat; Jack Y. Yang; Mary Qu Yang; Ping Gong 001; Edward J. Perkins; Youping Deng (BIBE, 2007)

Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. - Jack Y. Yang; Andrzej Niemierko; Mary Qu Yang; Youping Deng (BIBE, 2007)

An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine Learning. - Mary Qu Yang; Jack Y. Yang (BIBE, 2007)

A Computational Approach to Understand Arabidopsis thaliana and Soybean Resistance to Fusarium solani (Fsg). - Jiazheng Yuan; Mengxia Zhu; M. Javed Iqbal; Jack Y. Yang; David A. Lightfoot (BIBE, 2007)

Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. - Christopher J. Oldfield; Jingwei Meng; Jack Y. Yang; Vladimir N. Uversky; A. Keith Dunker (BIOCOMP, 2007)

Classification of Brain Glioma by Using Neural Networks Ensemble with Multi-Task Learning. - Jack Y. Yang; Guo-Zheng Li 001; Li-Xin Liu; Mary Qu Yang (BIOCOMP, 2007)

The 2007 World Congress in Computer Science, Computer Engineering, and Applied Computing Invited Banquet Keynote Lecture: Using Bioinformatics and Machine Learning to Predict Potential Malignancies. - Jack Y. Yang; Mary Qu Yang (BIOCOMP, 2007)

Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches. - Jack Y. Yang; Andrzej Niemierko; Mary Qu Yang; Zuojie Luo; Jianling Li (CIBCB, 2007)

Evolving MIMO Flexible Neural Trees for Nonlinear System Identification. - Yuehui Chen; Feng Chen; Jack Y. Yang (IC-AI, 2007)

Feature Selection for Co-Training: A QSAR Study. - Guo-Zheng Li 001; Dan Li; Wen-Cong Lu; Jack Y. Yang; Mary Qu Yang (IC-AI, 2007)

Support Vector Machines Applied to Research of Ancient Chinese Porcelain: Modeling of Jun Glaze. - Lu-Jin You; Guo-Zheng Li 001; Jack Y. Yang (IC-AI, 2007)

Stock Index Forecasting Using PSO Based Selective Neural Network Ensemble. - Xueqin Zhang; Yuehui Chen; Jack Y. Yang (IC-AI, 2007)

Asymmetric Bagging and Feature Selection for Activities Prediction of Drug Molecules. - Guo-Zheng Li 001; Hao-Hua Meng; Mary Qu Yang; Jack Y. Yang (IMSCCS, 2007)

Classification of proteins multiple-labelled and single-labelled with protein functional classes. - Mary Qu Yang; Jack Y. Yang; Okan K. Ersoy (Int. J. Gen. Syst., 2007)

Abnormal Traffic Detection in VoIP by Using Machine Learning Approaches. - Yuhai Liu; Guo-Zheng Li 001; Wenqian Yu; Jianqun Xu; Jack Y. Yang; Mary Qu Yang (IC-AI, 2008)

A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution. - Xue-Qiang Zeng; Guo-Zheng Li 001; Jack Y. Yang; Mary Qu Yang (ISBRA, 2008)

High Performance Computing and Computational Intelligence: Link to the Translational Medicine and Personalized Healthcare - Banquet Keynote Lecture. - Jack Y. Yang; Mary Qu Yang; Hamid R. Arabnia (PDPTA, 2008)

Asymmetric bagging and feature selection for activities prediction of drug molecules. - Guo-Zheng Li 001; Hao-Hua Meng; Wen-Cong Lu; Jack Y. Yang; Mary Qu Yang (BMC Bioinform., 2008)

Dimension reduction with redundant gene elimination for tumor classification. - Xue-Qiang Zeng; Guo-Zheng Li 001; Jack Y. Yang; Mary Qu Yang; Gengfeng Wu (BMC Bioinform., 2008)

2009 and beyond: the decade of personalised medicine. - Pan Du; Simon M. Lin; Mary Qu Yang; Jack Y. Yang (Int. J. Comput. Biol. Drug Des., 2008)

Promoting synergistic research and education in computational biology and drug design. - Jonathan L. Jesneck; Jack Y. Yang (Int. J. Comput. Biol. Drug Des., 2008)

Improving prediction accuracy of drug activities by utilising unlabelled instances with feature selection. - Guo-Zheng Li 001; Jack Y. Yang; Wen-Cong Lu; Dan Li; Mary Qu Yang (Int. J. Comput. Biol. Drug Des., 2008)

Feature selection for the imbalanced QSAR problems by using EasyEnsemble. - Tian-Yu Liu; Guo-Zheng Li 001; Jack Y. Yang; Mary Qu Yang (Int. J. Comput. Biol. Drug Des., 2008)

Prediction of lipid-interacting amino acid residues from sequence features. - Liangjiang Wang; Stephanie Jimenez Irausquin; Jack Y. Yang (Int. J. Comput. Biol. Drug Des., 2008)

Identification of Intrinsically Unstructured Proteins using hierarchical classifier. - Jack Y. Yang; Mary Qu Yang (Int. J. Data Min. Bioinform., 2008)

New statistical learning theory paradigms adapted to breast cancer diagnosis/classification using image and non-image clinical data. - Walker H. Land Jr.; John J. Heine; Thomas Raway; Alda Mizaku; Nataliya Kovalchuk; Jack Y. Yang; Mary Qu Yang (Int. J. Funct. Informatics Pers. Medicine, 2008)

Feature selection for gene function prediction using multi-labelled lazy learning. - Yuhai Liu; Guo-Zheng Li 001; Hongyu Zhang 002; Mary Qu Yang; Jack Y. Yang (Int. J. Funct. Informatics Pers. Medicine, 2008)

Transforming medicine: functional informatics, drug design, and personalised healthcare. - Jack Y. Yang; Mary Qu Yang (Int. J. Funct. Informatics Pers. Medicine, 2008)

A Personalized Traditional Chinese Medicine System in the case of Cai's gynecology. - Mingyu You; Guo-Zheng Li 001; Xue-Qiang Zeng; Lei Ge; Lijuan Bi; Suying Huang; Mary Qu Yang; Jack Y. Yang (Int. J. Funct. Informatics Pers. Medicine, 2008)

Ensemble Voting System for Multiclass protein fold Recognition. - Yuehui Chen; Feng Chen; Jack Y. Yang; Mary Qu Yang (Int. J. Pattern Recognit. Artif. Intell., 2008)

Redundant Gene Selection Based on Particle Swarm Optimization. - Su-Fen Chen; Xue-Qiang Zeng; Guo-Zheng Li 001; Jack Y. Yang; Mary Qu Yang (IJCBS, 2009)

Next Generation Sequence Analysis Using Genetic Algorithms on Multi-core Technology. - Kaiqi Xiong; Sang C. Suh; Mary Qu Yang; Jack Y. Yang; Hamid R. Arabnia (IJCBS, 2009)

Prosima: Protein Similarity Algorithm. - Tomás Novosád; Václav Snásel; Ajith Abraham; Jack Y. Yang (NaBIC, 2009)

The Impact of Supercomputing in the Next Generation Sequencing Data Mining. - Mary Qu Yang; Sang C. Suh; Kaiqi Xiong; Jack Y. Yang; Hamid R. Arabnia (PDPTA, 2009)

YAPS: Yet Another Protein Similarity. - Tomás Novosád; Václav Snásel; Ajith Abraham; Jack Y. Yang (SoCPaR, 2009)

Promoting inter/multidisciplinary education and research in bioinformatics, systems biology and intelligent computing. - Mary Qu Yang; Andrzej Niemierko; Jack Y. Yang; Yufang Jin (Int. J. Comput. Biol. Drug Des., 2009)

Lecture notes: 2010 and beyond, the decade of high-performance computing for the next-generation sequence analysis. - Mary Qu Yang; Jack Y. Yang (Int. J. Comput. Biol. Drug Des., 2009)

Irrelevant gene elimination for Partial Least Squares based Dimension Reduction by using feature probes. - Xue-Qiang Zeng; Guo-Zheng Li 001; Gengfeng Wu; Jack Y. Yang; Mary Qu Yang (Int. J. Data Min. Bioinform., 2009)

An Enhanced Lipschitz Embedding Classifier for Multi-Emotion Speech Analysis. - Mingyu You; Guo-Zheng Li 001; Jack Y. Yang; Mary Qu Yang (Int. J. Pattern Recognit. Artif. Intell., 2009)

Combining support vector regression with feature selection for multivariate calibration. - Guo-Zheng Li 001; Hao-Hua Meng; Mary Qu Yang; Jack Y. Yang (Neural Comput. Appl., 2009)

Feature selection for semi-supervised multi-label learning with application to gene function analysis. - Guo-Zheng Li 001; Mingyu You; Lei Ge; Jack Y. Yang; Mary Qu Yang (BCB, 2010)

A conceptual cellular interaction model of left ventricular remodelling post-MI: dynamic network with exit-entry competition strategy. - Yunji Wang; Hai-Chao Han; Jack Y. Yang; Merry Lindsey; Yufang Jin (BMC Syst. Biol., 2010)

BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features. - Liangjiang Wang; Caiyan Huang; Mary Qu Yang; Jack Y. Yang (BMC Syst. Biol., 2010)

3D Protein structure prediction with genetic tabu search algorithm. - Xiaolong Zhang 002; Ting Wang; Huiping Luo; Jack Y. Yang; Youping Deng; Jinshan Tang; Mary Qu Yang (BMC Syst. Biol., 2010)

Identifying Differentially Expressed Genes based on probe level data for GeneChip arrays. - Zhongxue Chen; Monnie McGee; Qingzhong Liu; Y. Megan Kong; Xudong Huang; Jack Y. Yang; Richard H. Scheuermann (Int. J. Comput. Biol. Drug Des., 2010)

Improving CT prediction of treatment response in patients with metastatic colorectal carcinoma using statistical learning. - Walker H. Land Jr.; Dan Margolis; Ronald Gottlieb; Jack Y. Yang; Elizabeth A. Krupinski (Int. J. Comput. Biol. Drug Des., 2010)

Searching Protein 3-D Structures for Optimal Structure Alignment Using Intelligent Algorithms and Data Structures. - Tomás Novosád; Václav Snásel; Ajith Abraham; Jack Y. Yang (IEEE Trans. Inf. Technol. Biomed., 2010)

Statistical methods on detecting differentially expressed genes for RNA-seq data. - Zhongxue Chen; Jianzhong Liu; Hon Ng; Saralees Nadarajah; Howard L. Kaufman; Jack Y. Yang; Youping Deng (BMC Syst. Biol., 2011)

Kernelized partial least squares for feature reduction and classification of gene microarray data. - Walker H. Land Jr.; Xingye Qiao; Daniel Margolis; William S. Ford; Christopher T. Paquette; Joseph F. Perez-Rogers; Jeffrey A. Borgia; Jack Y. Yang; Youping Deng (BMC Syst. Biol., 2011)

From genes to networks: in systematic points of view. - Ke Zhang; Yunlong Liu; Jack Y. Yang; Hamid R. Arabnia; Andrzej Niemierko; Arif Ghafoor; Weizhong Li; Youping Deng (BMC Syst. Biol., 2011)

A new statistical approach to combining p-values using gamma distribution and its application to genome-wide association study. - Zhongxue Chen; William Yang; Qingzhong Liu; Jack Y. Yang; Jing Li 003; Mary Yang (BMC Bioinform., 2014)

Developing discriminate model and comparative analysis of differentially expressed genes and pathways for bloodstream samples of diabetes mellitus type 2. - Chang Liu; Lili Lu; Quan Kong; Yan Li; Haihua Wu; William Yang; Shandan Xu; Xinyu Yang; Xiaolei Song; Jack Y. Yang; Mary Qu Yang; Youping Deng (BMC Bioinform., 2014)

Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. - Jack Y. Yang; A. Keith Dunker; Jun S. Liu; Xiang Qin; Hamid R. Arabnia; William Yang; Andrzej Niemierko; Zhongxue Chen; Zuojie Luo; Liangjiang Wang; Yunlong Liu; Dong Xu; et al. (BMC Bioinform., 2014)

Identification of genes and pathways involved in kidney renal clear cell carcinoma. - William Yang; Kenji Yoshigoe; Xiang Qin; Jun S. Liu; Jack Y. Yang; Andrzej Niemierko; Youping Deng; Yunlong Liu; A. Keith Dunker; Zhongxue Chen; Liangjiang Wang; Dong Xu; et al. (BMC Bioinform., 2014)

Byzantine fault tolerance for collaborative editing with commutative operations. - Wenbing Zhao 001; Mamdouh Babi; William Yang; Xiong Luo; Yueqin Zhu; Jack Y. Yang; Chaomin Luo; Mary Yang (EIT, 2016)

High-throughput state-machine replication using software transactional memory. - Wenbing Zhao 001; William Yang; Honglei Zhang; Jack Y. Yang; Xiong Luo; Yueqin Zhu; Mary Yang; Chaomin Luo (J. Supercomput., 2016)

Comprehensive analysis of pulmonary adenocarcinoma in situ (AIS) revealed new insights into lung cancer progression. - Dan Li; William Yang; Yifan Zhang; Jack Y. Yang; Weida Tong; Renchu Guan; Mary Qu Yang (BIBM, 2017)

Toward precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis. - Yifan Zhang; William Yang; Dan Li; Jack Y. Yang; Renchu Guan; Weida Tong; Mary Qu Yang (BIBM, 2017)

The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by Aβ25-35 triggered in SH-SY5Y cell. - Ling Hu; Rong Zhang; Qiong Yuan; Yinping Gao; Mary Qu Yang; Chunxiang Zhang; Jiankun Huang; Yufei Sun; William Yang; Jack Y. Yang; Zhen-li Min; Jing Cheng; et al. (BMC Syst. Biol., 2018)