Base-pair ambiguity and the kinetics of RNA folding. - Guangyao Zhou; Jackson Loper; Stuart Geman (BMC Bioinform., 2019)

General linear-time inference for Gaussian Processes on one dimension. - Jackson Loper; David M. Blei; John P. Cunningham; Liam Paninski (CoRR, 2020)

A general linear-time inference method for Gaussian Processes on one dimension. - Jackson Loper; David M. Blei; John P. Cunningham; Liam Paninski (J. Mach. Learn. Res., 2021)

BARcode DEmixing through Non-negative Spatial Regression (BarDensr). - Shuonan Chen; Jackson Loper; Xiaoyin Chen; Alex Vaughan; Anthony M. Zador; Liam Paninski (PLoS Comput. Biol., 2021)

Blind demixing methods for recovering dense neuronal morphology from barcode imaging data. - Shuonan Chen; Jackson Loper; Pengcheng Zhou; Liam Paninski (PLoS Comput. Biol., 2022)

Variational Inference with Coverage Guarantees. - Yash P. Patel; Declan McNamara; Jackson Loper; Jeffrey Regier; Ambuj Tewari (CoRR, 2023)

Sequential Monte Carlo for Inclusive KL Minimization in Amortized Variational Inference. - Declan McNamara; Jackson Loper; Jeffrey Regier (AISTATS, 2024)

Variational Inference with Coverage Guarantees in Simulation-Based Inference. - Yash P. Patel; Declan McNamara; Jackson Loper; Jeffrey Regier; Ambuj Tewari (ICML, 2024)

Globally Convergent Variational Inference. - Declan McNamara; Jackson Loper; Jeffrey Regier (NeurIPS, 2024)