Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data. - Jackson Nowotny; Sharif Ahmed; Lingfei Xu; Oluwatosin Oluwadare; Hannah Chen 002; Noelan Hensley; Tuan Trieu; Renzhi Cao; Jianlin Cheng (BMC Bioinform., 2015)

ConEVA: a toolbox for comprehensive assessment of protein contacts. - Badri Adhikari; Jackson Nowotny; Debswapna Bhattacharya; Jie Hou 001; Jianlin Cheng (BMC Bioinform., 2016)

3Drefine: an interactive web server for efficient protein structure refinement. - Debswapna Bhattacharya; Jackson Nowotny; Renzhi Cao; Jianlin Cheng (Nucleic Acids Res., 2016)