Embodied intentional dynamics of bacterial behaviour. - Catholijn M. Jonker; Jacky L. Snoep; Jan Treur; Hans V. Westerhoff; Wouter C. A. Wijngaards (AAMAS, 2002)

Web-based kinetic modelling using JWS Online. - Brett G. Olivier; Jacky L. Snoep (Bioinform., 2004)

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. - Nicolas Le Novère; Benjamin J. Bornstein; Alexander Broicher; Mélanie Courtot; Marco Donizelli; Harish Dharuri; Lu Li 002; Herbert M. Sauro; Maria J. Schilstra; Bruce E. Shapiro; Jacky L. Snoep; Michael Hucka (Nucleic Acids Res., 2006)

Data and Model Integration Using JWS Online. - Carel van Gend; Riaan Conradie; Franco B. du Preez; Jacky L. Snoep (Silico Biol., 2007)

Rightfield: Embedding Ontology Term Selection into Spreadsheets for the Annotation of Biological Data. - Katy Wolstencroft; Matthew Horridge; Stuart Owen; Wolfgang Müller 001; Finn Bacall; Jacky L. Snoep; Olga Krebs; Carole A. Goble (ISWC (Posters & Demos), 2010)

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. - Chen Li 011; Marco Donizelli; Nicolas Rodriguez 001; Harish Dharuri; Lukas Endler; Vijayalakshmi Chelliah; Lu Li 002; Enuo He; Arnaud Henry; Melanie I. Stefan; Jacky L. Snoep; Michael Hucka; et al. (BMC Syst. Biol., 2010)

The Living Cell as a Multi-agent Organisation: A Compositional Organisation Model of Intracellular Dynamics. - Catholijn M. Jonker; Jacky L. Snoep; Jan Treur; Hans V. Westerhoff; Wouter C. A. Wijngaards (Trans. Comput. Collect. Intell., 2010)

RightField: embedding ontology annotation in spreadsheets. - Katy Wolstencroft; Stuart Owen; Matthew Horridge; Olga Krebs; Wolfgang Müller 001; Jacky L. Snoep; Franco B. du Preez; Carole A. Goble (Bioinform., 2011)

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language. - Dagmar Waltemath; Richard R. Adams; Frank T. Bergmann; Michael Hucka; Fedor A. Kolpakov; Andrew K. Miller; Ion I. Moraru; David P. Nickerson; Sven Sahle; Jacky L. Snoep; Nicolas Le Novère (BMC Syst. Biol., 2011)

Minimum Information About a Simulation Experiment (MIASE). - Dagmar Waltemath; Richard R. Adams; Daniel A. Beard; Frank T. Bergmann; Upinder S. Bhalla; Randall Britten; Vijayalakshmi Chelliah; Mike T. Cooling; Jonathan Cooper; Edmund J. Crampin; Alan Garny; Stefan Hoops; et al. (PLoS Comput. Biol., 2011)

RightField: Scientific Knowledge Acquisition by Stealth through Ontology-Enabled Spreadsheets. - Katy Wolstencroft; Stuart Owen; Matthew Horridge; Wolfgang Müller 001; Finn Bacall; Jacky L. Snoep; Franco B. du Preez; Quyen Nguyen; Olga Krebs; Carole A. Goble (EKAW, 2012)

Semantic Data and Models Sharing in Systems Biology: The Just Enough Results Model and the SEEK Platform. - Katherine Wolstencroft; Stuart Owen; Olga Krebs; Wolfgang Müller 001; Quyen Nguyen; Jacky L. Snoep; Carole A. Goble (ISWC (2), 2013)

Stealthy annotation of experimental biology by spreadsheets. - Katherine Wolstencroft; Stuart Owen; Matthew Horridge; Simon Jupp; Olga Krebs; Jacky L. Snoep; Franco B. du Preez; Wolfgang Müller 001; Robert Stevens 001; Carole A. Goble (Concurr. Comput. Pract. Exp., 2013)

FAIRDOM approach for semantic interoperability of systems biology data and models. - Olga Krebs; Katy Wolstencroft; Natalie J. Stanford; Norman Morrison; Martin Golebiewski; Stuart Owen; Quyen Nguyen; Jacky L. Snoep; Wolfgang Müller 001; Carole A. Goble (ICBO, 2015)

SEEK: a systems biology data and model management platform. - Katherine Wolstencroft; Stuart Owen; Olga Krebs; Quyen Nguyen; Natalie J. Stanford; Martin Golebiewski; Andreas Weidemann; Meik Bittkowski; Lihua An; David Shockley; Jacky L. Snoep; Wolfgang Müller 001; et al. (BMC Syst. Biol., 2015)

SupraBiology 2014: Promoting UK-China collaboration on Systems Biology and High Performance Computing. - Ettore Murabito; Riccardo Colombo; Chengkun Wu; Malkhey Verma; Samrina Rehman; Jacky L. Snoep; Shaoliang Peng; Naiyang Guan; Xiangke Liao; Hans V. Westerhoff (Quant. Biol., 2015)

FAIRDOM approach for semantic interoperability of systems biology data and models. - Olga Krebs; Katy Wolstencroft; Natalie J. Stanford; Norman Morrison; Martin Golebiewski; Rostyk Kuzyakiv; Stuart Owen; Quyen Nguyen; Jacky L. Snoep; Wolfgang Müller 001; Carole A. Goble (ODLS, 2016)

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt. - Nicola J. Mulder; Alan Christoffels; Tulio de Oliveira; Junaid Gamieldien; Scott Hazelhurst; Fourie Joubert; Judit Kumuthini; Ché S. Pillay; Jacky L. Snoep; Özlem Tastan Bishop; Nicki Tiffin (PLoS Comput. Biol., 2016)

The JWS online simulation database. - Martin Peters; Johann J. Eicher; David D. van Niekerk; Dagmar Waltemath; Jacky L. Snoep (Bioinform., 2017)

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research. - Katherine Wolstencroft; Olga Krebs; Jacky L. Snoep; Natalie J. Stanford; Finn Bacall; Martin Golebiewski; Rostyk Kuzyakiv; Quyen Nguyen; Stuart Owen; Stian Soiland-Reyes; Jakub Straszewski; David D. van Niekerk; et al. (Nucleic Acids Res., 2017)

Harmonizing semantic annotations for computational models in biology. - Maxwell Lewis Neal; Matthias König 003; David P. Nickerson; Goksel Misirli; Reza Kalbasi; Andreas Dräger; Koray Atalag; Vijayalakshmi Chelliah; Michael T. Cooling; Daniel L. Cook; Sharon M. Crook; Miguel de Alba; et al. (Briefings Bioinform., 2019)

Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study. - Shade Horn; Jacky L. Snoep; David D. van Niekerk (BMC Bioinform., 2021)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

Inhibitor titrations reveal low control of glyceraldehyde 3-phosphate dehydrogenase and high control of hexokinase on glycolytic flux in an aggressive triple-negative breast cancer cell line. - Theresa Kouril; Craig October; Stephanie Hollocks; Christoff Odendaal; David D. van Niekerk; Jacky L. Snoep (Biosyst., 2023)

Is distance from equilibrium a good indicator for a reaction's flux control? - David D. van Niekerk; Erik Rust; Frank J. Bruggeman; Hans V. Westerhoff; Jacky L. Snoep (Biosyst., 2023)