Systems Level Analysis of Systemic Sclerosis Shows a Network of Immune and Profibrotic Pathways Connected with Genetic Polymorphisms. - J. Matthew Mahoney; Jaclyn N. Taroni; Viktor Martyanov; Tammara A. Wood; Casey S. Greene; Patricia A. Pioli; Monique E. Hinchcliff; Michael L. Whitfield (PLoS Comput. Biol., 2015)

Integrated machine learning pipeline for aberrant biomarker enrichment (i-mAB): characterizing clusters of differentiation within a compendium of systemic lupus erythematosus patients. - Trang T. Le; Nigel O. Blackwood; Jaclyn N. Taroni; Weixuan Fu; Matthew K. Breitenstein (AMIA, 2018)

Text Mining and Machine Learning for Precision Medicine. - Graciela Gonzalez 001; Zhiyong Lu; Robert Leaman; Davy Weissenbacher; Mary Regina Boland; Yong Chen 016; Jingcheng Du; Juliane Fluck; Casey S. Greene; John H. Holmes; Aditya Kashyap; Rikke Linnemann Nielsen; et al. (PSB, 2019)

annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions. - Krutika S. Gaonkar; Federico Marini 002; Komal S. Rathi; Payal Jain; Yuankun Zhu; Nicholas A. Chimicles; Miguel A. Brown; Ammar S. Naqvi; Bo Zhang 062; Phillip B. Storm; John M. Maris; Pichai Raman; et al. (BMC Bioinform., 2020)

Ten simple rules for large-scale data processing. - Arkarachai Fungtammasan; Alexandra Lee; Jaclyn N. Taroni; Kurt Wheeler; Chen-Shan Chin; Sean Davis 001; Casey S. Greene (PLoS Comput. Biol., 2022)