Hidden Markov Models for Human Genes. - Pierre Baldi; Søren Brunak; Yves Chauvin; Jacob Engelbrecht; Anders Krogh (NIPS, 1993)

Periodic Sequence Patterns in Human Exons. - Pierre Baldi; Søren Brunak; Yves Chauvin; Jacob Engelbrecht; Anders Krogh (ISMB, 1995)

Investigations of Escherichia coli Promoter Sequences with Artificial Neural Networks: New Signals Discovered Upstream of the Transcriptional Startpoint. - Anders Gorm Pedersen; Jacob Engelbrecht (ISMB, 1995)

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites. - Henrik Nielsen; Jacob Engelbrecht; Søren Brunak; Gunnar von Heijne (Int. J. Neural Syst., 1997)