Flow: Statistics, visualization and informatics for flow cytometry. - Jacob Frelinger; Thomas B. Kepler; Cliburn Chan (Source Code Biol. Medicine, 2008)

Fcm - A python library for flow cytometry. - Jacob Frelinger; Adam Richards; Cliburn Chan (SciPy, 2012)

Hierarchical Modeling for Rare Event Detection and Cell Subset Alignment across Flow Cytometry Samples. - Andrew Cron; Cécile Gouttefangeas; Jacob Frelinger; Lin Lin 003; Satwinder K. Singh; Cedrik M. Britten; Marij J. P. Welters; Sjoerd H. van der Burg; Mike West; Cliburn Chan (PLoS Comput. Biol., 2013)

OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis. - Greg Finak; Jacob Frelinger; Wenxin Jiang 002; Evan W. Newell; John Ramey; Mark M. Davis; Spyros A. Kalams; Stephen C. De Rosa; Raphael Gottardo (PLoS Comput. Biol., 2014)