Intrinsic cell factors that influence tumourigenicity in cancer stem cells - towards hallmarks of cancer stem cells - Jacob G. Scott; Prakash Chinnaiyan; Alexander R. A. Anderson; Anita B. Hjelmeland; David Basanta (CoRR, 2013)

Microenvironmental Variables Must Influence Intrinsic Phenotypic Parameters of Cancer Stem Cells to Affect Tumourigenicity. - Jacob G. Scott; Anita B. Hjelmeland; Prakash Chinnaiyan; Alexander R. A. Anderson; David Basanta (PLoS Comput. Biol., 2014)

Steering Evolution with Sequential Therapy to Prevent the Emergence of Bacterial Antibiotic Resistance. - Daniel Nichol; Peter Jeavons 001; Alexander G. Fletcher; Robert A. Bonomo; Philip K. Maini; Jerome L. Paul; Robert A. Gatenby; Alexander R. A. Anderson; Jacob G. Scott (PLoS Comput. Biol., 2015)

Signal intensity analysis of ecological defined habitat in soft tissue sarcomas to predict metastasis development. - Hamidreza Farhidzadeh; Baishali Chaudhury; Jacob G. Scott; Dmitry B. Goldgof; Lawrence O. Hall; Robert A. Gatenby; Robert J. Gillies; Meera Raghavan (Computer-Aided Diagnosis, 2016)

Classification of progression free survival with nasopharyngeal carcinoma tumors. - Hamidreza Farhidzadeh; Joo Y. Kim; Jacob G. Scott; Dmitry B. Goldgof; Lawrence O. Hall; Louis B. Harrison (Computer-Aided Diagnosis, 2016)

A quantitative histogram-based approach to predict treatment outcome for Soft Tissue Sarcomas using pre- and post-treatment MRIs. - Hamidreza Farhidzadeh; Dmitry B. Goldgof; Lawrence O. Hall; Jacob G. Scott; Robert A. Gatenby; Robert J. Gillies; Meera Raghavan (SMC, 2016)

Spatial Metrics of Tumour Vascular Organisation Predict Radiation Efficacy in a Computational Model. - Jacob G. Scott; Alexander G. Fletcher; Alexander R. A. Anderson; Philip K. Maini (PLoS Comput. Biol., 2016)

egtplot: A Python Package for Three-Strategy Evolutionary Games. - Inom Mirzaev; Drew F. K. Williamson; Jacob G. Scott (J. Open Source Softw., 2018)

An introduction to using counterdiabatic driving to eliminate genetic lag in changing environments. - Emily L. Dolson; Shamreen Iram; Joshua Chiel; Julia Pelesko; Nikhil Krishnan; Özenç Güngör; Benjamin Kuznets-Speck; Sebastian Deffner; Efe Ilker; Jacob G. Scott; Michael Hinczewski (ALIFE, 2020)

Exploring complex networks with the ICON R package. - Raoul R. Wadhwa; Jacob G. Scott (CoRR, 2020)

CancerSim: A Cancer Simulation Package for Python 3. - Luka Opasic; Jacob G. Scott; Arne Traulsen; Carsten Fortmann-Grote (J. Open Source Softw., 2020)

Accessing United States Bulk Patent Data with patentpy and patentr. - James Yu; Hayley Beltz; Milind Y. Desai; Péter Érdi; Jacob G. Scott; Raoul R. Wadhwa (CoRR, 2021)

Network potential identifies therapeutic miRNA cocktails in Ewing sarcoma. - Davis T. Weaver; Kathleen I. Pishas; Drew F. K. Williamson; Jessica Scarborough; Stephen L. Lessnick; Andrew Dhawan; Jacob G. Scott (PLoS Comput. Biol., 2021)

Benchmarking R packages for Calculation of Persistent Homology. - Eashwar V. Somasundaram; Shael E. Brown; Adam Litzler; Jacob G. Scott; Raoul R. Wadhwa (R J., 2021)

Threshold-awareness in adaptive cancer therapy. - Mingyi Wang; Jacob G. Scott; Alexander Vladimirsky (PLoS Comput. Biol., 2024)

Quantitative evaluation of DNA damage repair dynamics to elucidate predictors of autism vs. cancer in individuals with germline PTEN variants. - Ruipeng Wei; Masahiro Hitomi; Tammy Sadler; Lamis Yehia; Daniela Calvetti; Jacob G. Scott; Charis Eng (PLoS Comput. Biol., 2024)

Diverse mutant selection windows shape spatial heterogeneity in evolving populations. - Eshan S. King; Dagim Shiferaw Tadele; Beck Pierce; Michael Hinczewski; Jacob G. Scott (PLoS Comput. Biol., 2024)

DeepCellCount: Cell Counting Using Two-Step Deep Learning. - Sara Tesfamariam; Isah Abdullahi Lawal; Arda Durmaz; Jacob G. Scott (VISIGRAPP (2): VISAPP, 2025)