Improving bisulfite short-read mapping efficiency with hairpin-bisulfite data. - Jacob Porter; Ming-an Sun; Hehuang Xie; Liqing Zhang 002 (ICCABS, 2014)

Objective and Comprehensive Evaluation of Bisulfite Short Read Mapping Tools. - Hong Tran; Jacob Porter; Ming-an Sun; Hehuang Xie; Liqing Zhang 002 (Adv. Bioinformatics, 2014)

A pharmacophore hypothesis and computationally optimized lead compounds for VKORC1. - Jacob Porter (ICCABS, 2017)

InfoTrim: A DNA read quality trimmer using entropy. - Jacob Porter; Liqing Zhang 002 (ICCABS, 2017)

Using machine learning to predict DNA read alignment quality. - Jacob Porter (PeerJ Prepr., 2018)

Mapping Bisulfite-Treated Short DNA Reads. - Jacob Porter (2018)

DNA Read Feature Importance Using Machine Learning for Read Alignment Categories. - Jacob Porter (ICCABS, 2020)

On the Nature and Complexity of an Impartial Two-Player Variant of the Game Lights-Out. - Eugene Fiorini; Maxwell Fogler; Katherine Levandosky; Bryan Lu; Jacob Porter; Andrew Woldar (CoRR, 2024)