Generating non-overlapping displays of nucleic acid secondary structure. - Bruce A. Shapiro; Jacob V. Maizel; Lewis E. Lipkin; Kathleen M. Currey; Colin G. Whitney (Nucleic Acids Res., 1984)

A sequence analysis system encompassing rules for DNA helical distortion. - Bruce A. Shapiro; Ruth Nussinov; Lewis E. Lipkin; Jacob V. Maizel (Nucleic Acids Res., 1986)

A program for predicting significant RNA secondary structures. - Shu-Yun Le; Jih-Hsiang Chen; Kathleen M. Currey; Jacob V. Maizel (Comput. Appl. Biosci., 1988)

An improved secondary structure computation method and its application to intervening sequence in the human alpha-likeglobin mRNA precursors. - Shu-Yun Le; Jih-Hsiang Chen; Ruth Nussinov; Jacob V. Maizel (Comput. Appl. Biosci., 1988)

Discriminant analysis of promoter regions in Escherichia coli sequences. - Kotoko Nakata; Minoru Kanehisa; Jacob V. Maizel (Comput. Appl. Biosci., 1988)

A fixed-point alignment technique for detection of recurrent and common sequence motifs associated with biological features. - John Owens; Devjani Chatterjee; Ruth Nussinov; Andrzej K. Konopka; Jacob V. Maizel (Comput. Appl. Biosci., 1988)

RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. - Shu-Yun Le; John Owens; Ruth Nussinov; Jih-Hsiang Chen; Bruce A. Shapiro; Jacob V. Maizel (Comput. Appl. Biosci., 1989)

What is happening on the Hill? (panel session). - Donna J. Cox; Larry Smarr; Jacob V. Maizel; Rich Hirsh (SIGGRAPH (Panels), 1990)

A computational procedure for assessing the significance of RNA secondary structure. - Jih-Hsiang Chen; Shu-Yun Le; Bruce A. Shapiro; Kathleen M. Currey; Jacob V. Maizel (Comput. Appl. Biosci., 1990)

Detection of unusual RNA folding regions in HIV and SIV sequences. - Shu-Yun Le; Jih-Hsiang Chen; Jacob V. Maizel (Comput. Appl. Biosci., 1991)

A procedure for RNA pseudoknot prediction. - Jih-Hsiang Chen; Shu-Yun Le; Jacob V. Maizel (Comput. Appl. Biosci., 1992)

Optimization and Performance Analysis of a Massively Parallel Dynamic Programming Algorithm for Rna Secondary Structure Prediction. - Bruce A. Shapiro; Jih-Hsiang Chen; Tim Busse; Joseph Navetta; Wojciech Kasprzak; Jacob V. Maizel Jr. (Int. J. High Perform. Comput. Appl., 1995)

Optimization of an RNA Folding Algorithm for Parallel Architectures. - Jih-Hsiang Chen; Shu-Yun Le; Bruce A. Shapiro; Jacob V. Maizel (Parallel Comput., 1998)

A data mining approach to discover unusual folding regions in genome sequences. - Shu-Yun Le; Wei-Min Liu; Jacob V. Maizel (Knowl. Based Syst., 2002)

Statistical Inference for Well-ordered Structures in Nucleotide Sequences. - Shu-Yun Le; Jih-Hsiang Chen; Jacob V. Maizel (CSB, 2003)

Discovering well-ordered folding patterns in nucleotide sequences. - Shu-Yun Le; Jih-Hsiang Chen; Danielle Konings; Jacob V. Maizel (Bioinform., 2003)

An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes. - Shu-Yun Le; Jacob V. Maizel Jr.; Kaizhong Zhang (CSB, 2004)

Finding Conserved Well-Ordered RNA Structures In Genomic Sequences. - Shu-Yun Le; Jacob V. Maizel Jr.; Kaizhong Zhang (Int. J. Comput. Intell. Appl., 2004)