On the Application of Software Metrics to UML Models. - Jacqueline A. McQuillan; James F. Power (MoDELS (Workshops), 2006)

Experiences of using the Dagstuhl Middle Metamodel for defining software metrics. - Jacqueline A. McQuillan; James F. Power (PPPJ, 2006)

A Metamodel for the Measurement of Object-Oriented Systems: An Analysis using Alloy. - Jacqueline A. McQuillan; James F. Power (ICST, 2008)

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. - Tim Carver; Simon R. Harris; Matthew Berriman; Julian Parkhill; Jacqueline A. McQuillan (Bioinform., 2012)

GeneDB - an annotation database for pathogens. - Flora J. Logan-Klumpler; Nishadi De Silva; Ulrike Böhme; Matthew B. Rogers; Giles Velarde; Jacqueline A. McQuillan; Tim Carver; Martin Aslett; Christian Olsen; Sandhya Subramanian; Isabelle Phan; Carol Farris; et al. (Nucleic Acids Res., 2012)

BamView: visualizing and interpretation of next-generation sequencing read alignments. - Tim Carver; Simon R. Harris; Thomas D. Otto; Matthew Berriman; Julian Parkhill; Jacqueline A. McQuillan (Briefings Bioinform., 2013)

IVA: accurate de novo assembly of RNA virus genomes. - Martin Hunt; Astrid Gall; Swee Hoe Ong; Jacqui Brener; Bridget Ferns; Philip J. R. Goulder; Eleni Nastouli; Jacqueline A. Keane; Paul Kellam; Thomas D. Otto (Bioinform., 2015)

Roary: rapid large-scale prokaryote pan genome analysis. - Andrew J. Page; Carla A. Cummins; Martin Hunt; Vanessa K. Wong; Sandra Reuter; Matthew T. G. Holden; Maria Fookes; Daniel Falush; Jacqueline A. Keane; Julian Parkhill (Bioinform., 2015)

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries. - Lars Barquist; Matthew Mayho; Carla A. Cummins; Amy K. Cain; Christine J. Boinett; Andrew J. Page; Gemma C. Langridge; Michael A. Quail; Jacqueline A. Keane; Julian Parkhill (Bioinform., 2016)

GFF3toEMBL: Preparing annotated assemblies for submission to EMBL. - Andrew J. Page; Sascha Steinbiss; Ben Taylor; Torsten Seemann; Jacqueline A. Keane (J. Open Source Softw., 2016)

Multilocus sequence typing by blast from de novo assemblies against PubMLST. - Andrew J. Page; Ben Taylor; Jacqueline A. Keane (J. Open Source Softw., 2016)

SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs. - Andrew J. Page; Martin Hunt; Torsten Seemann; Jacqueline A. Keane (J. Open Source Softw., 2017)