Automatic Derivation of Substructures Yields Novel Structural Building Blocks in Globular Proteins. - Xiru Zhang; Jacquelyn S. Fetrow; William A. Rennie; David L. Waltz; George Berg (ISMB, 1993)

Using Information Theory to Discover Side Chain Rotamer Classes: Analysis of the Effects of Local Backbone Structure. - Jacquelyn S. Fetrow; George Berg (Pacific Symposium on Biocomputing, 1999)

Heuristics for dependency conjectures in proteomic signaling pathways. - Edward E. Allen; Jacquelyn S. Fetrow; David J. John; Stan J. Thomas (ACM Southeast Regional Conference (1), 2005)

Reconstructing networks using co-temporal functions. - Edward E. Allen; Anthony Pecorella; Jacquelyn S. Fetrow; David J. John; William H. Turkett Jr. (ACM Southeast Regional Conference, 2006)

Bioinformatics and computing curriculum: a new model for interdisciplinary courses. - Jacquelyn S. Fetrow; David J. John (SIGCSE, 2006)

Scientific Software Development Is Not an Oxymoron. - Susan M. Baxter; Steven W. Day; Jacquelyn S. Fetrow; Stephanie J. Reisinger (PLoS Comput. Biol., 2006)

The shuffle index and evaluation of models of signal transduction pathways. - Edward E. Allen; Liyang Diao; Jacquelyn S. Fetrow; David J. John; Richard F. Loeser; Leslie B. Poole (ACM Southeast Regional Conference, 2007)

Additional limitations of the clustering validation method figure of merit. - Amy L. Olex; David J. John; Elizabeth M. Hiltbold; Jacquelyn S. Fetrow (ACM Southeast Regional Conference, 2007)

PDB-SQL: a storage engine for macromolecular data. - Edward E. Pryor Jr.; Jacquelyn S. Fetrow (ACM Southeast Regional Conference, 2007)

Metropolis-Hastings Algorithm and Continuous Regression for finding Next-State Models of Protein Modification using Information Scores. - David J. John; Jacquelyn S. Fetrow; James L. Norris (BIBE, 2007)

Examining effects of variability on systems biology modeling algorithms. - Rachel A. Black; David J. John; Jacquelyn S. Fetrow; James L. Norris (BCB, 2010)

Computational modeling of the effects of oxidative stress on the IGF-1 signaling pathway in human articular chondrocytes. - Pamela F. Marcott; Jacquelyn S. Fetrow; Richard F. Loeser; Edward E. Allen (BCB, 2010)

Comparison of Co-temporal Modeling Algorithms on Sparse Experimental Time Series Data Sets. - Edward E. Allen; James L. Norris; David J. John; Stan J. Thomas; William H. Turkett Jr.; Jacquelyn S. Fetrow (BIBE, 2010)

SC2ATmd: a tool for integration of the figure of merit with cluster analysis for gene expression data. - Amy L. Olex; Jacquelyn S. Fetrow (Bioinform., 2011)

PREX: PeroxiRedoxin classification indEX, a database of subfamily assignments across the diverse peroxiredoxin family. - Laura Soito; Chris Williamson; Stacy T. Knutson; Jacquelyn S. Fetrow; Leslie B. Poole; Kimberly J. Nelson (Nucleic Acids Res., 2011)

Continuous Cotemporal Probabilistic Modeling of Systems Biology Networks from Sparse Data. - David J. John; Jacquelyn S. Fetrow; James L. Norris (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

DASP3: identification of protein sequences belonging to functionally relevant groups. - Janelle B. Leuthaeuser; John H. Morris; Angela F. Harper; Thomas E. Ferrin; Patricia C. Babbitt; Jacquelyn S. Fetrow (BMC Bioinform., 2016)

An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins. - Angela F. Harper; Janelle B. Leuthaeuser; Patricia C. Babbitt; John H. Morris; Thomas E. Ferrin; Leslie B. Poole; Jacquelyn S. Fetrow (PLoS Comput. Biol., 2017)

New computational approaches to understanding molecular protein function. - Jacquelyn S. Fetrow; Patricia C. Babbitt (PLoS Comput. Biol., 2018)