Use of keyword hierarchies to interpret gene expression patterns. - Daniel R. Masys; John B. Welsh; J. Lynn Fink; Michael Gribskov; Igor Klacansky; Jacques Corbeil (Bioinform., 2001)

Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model. - Roman Sásik; Ézéquiel Calvo; Jacques Corbeil (Bioinform., 2002)

2HAPI: A Microarray Data Analysis System. - J. Lynn Fink; Scott Drewes; Hiren Patel; John B. Welsh; Daniel R. Masys; Jacques Corbeil; Michael Gribskov (Bioinform., 2003)

Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies. - Sébastien Boisvert; François Laviolette; Jacques Corbeil (J. Comput. Biol., 2010)

A General Framework for Analyzing Data from Two Short Time-Series Microarray Experiments. - Mohak Shah; Jacques Corbeil (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Building an HIV data mashup using Bio2RDF. - Marc-Alexandre Nolin; Michel Dumontier; François Belleau; Jacques Corbeil (Briefings Bioinform., 2012)

Feature Selection with Conjunctions of Decision Stumps and Learning from Microarray Data. - Mohak Shah; Mario Marchand; Jacques Corbeil (IEEE Trans. Pattern Anal. Mach. Intell., 2012)

Human Analysts at Superhuman Scales: What Has Friendly Software To Do? - Élénie Godzaridis; Sébastien Boisvert; Fangfang Xia; Mikhail Kandel; Steve Behling; Bill Long; Carlos P. Sosa; François Laviolette; Jacques Corbeil (Big Data, 2013)

Learning a peptide-protein binding affinity predictor with kernel ridge regression. - Sébastien Giguère; Mario Marchand; François Laviolette; Alexandre Drouin; Jacques Corbeil (BMC Bioinform., 2013)

Learning interpretable models of phenotypes from whole genome sequences with the Set Covering Machine. - Alexandre Drouin; Sébastien Giguère; Vladana Sagatovich; Maxime Déraspe; François Laviolette; Mario Marchand; Jacques Corbeil (CoRR, 2014)

Greedy Biomarker Discovery in the Genome with Applications to Antimicrobial Resistance. - Alexandre Drouin; Sébastien Giguère; Maxime Déraspe; François Laviolette; Mario Marchand; Jacques Corbeil (CoRR, 2015)

Machine Learning Assisted Design of Highly Active Peptides for Drug Discovery. - Sébastien Giguère; François Laviolette; Mario Marchand; Denise M. Tremblay; Sylvain Moineau; Xinxia Liang; Éric Biron; Jacques Corbeil (PLoS Comput. Biol., 2015)

Semantic Research Platform for Model Organisms. - Maxime Déraspe; Kalpana Karra; Gail Binkley; Julie M. Sullivan; Gos Micklem; Jacques Corbeil; J. Michael Cherry; Michel Dumontier (BMDID@ISWC, 2016)

Making Linked Data SPARQL with the InterMine Biological Data Warehouse. - Maxime Déraspe; Gail Binkley; Daniela Butano; Matthew Chadwick; J. Michael Cherry; Justin Clark-Casey; Sergio Contrino; Jacques Corbeil; Joshua Heimbach; Kalpana Karra; Rachel Lyne; Julie M. Sullivan; et al. (SWAT4LS, 2016)

Large scale modeling of antimicrobial resistance with interpretable classifiers. - Alexandre Drouin; Frédéric Raymond; Gaël Letarte St-Pierre; Mario Marchand; Jacques Corbeil; François Laviolette (CoRR, 2016)

The EcoChip: A Wireless Multi-Sensor Platform for Comprehensive Environmental Monitoring. - Matthieu Sylvain; Francis Lehoux; Steeve Morency; Felix Faucher; Eric Bharucha; Denise M. Tremblay; Denis Sarrazin; Sylvain Moineau; Michel Allard; Jacques Corbeil; Younès Messaddeq; Benoit Gosselin (ISCAS, 2018)

The EcoChip: A Wireless Multi-Sensor Platform for Comprehensive Environmental Monitoring. - Matthieu Sylvain; Francis Lehoux; Steeve Morency; Felix Faucher; Eric Bharucha; Denise M. Tremblay; Frédéric Raymond; Denis Sarrazin; Sylvain Moineau; Michel Allard; Jacques Corbeil; Younès Messaddeq; et al. (IEEE Trans. Biomed. Circuits Syst., 2018)

The EcoChip 2: An Autonomous Sensor Platform for Multimodal Bio-environmental Monitoring of the Northern Habitat. - Partha Sarati Das; Gabriel Gagnon-Turcotte; Karim Ouazaa; Karim Bouzid; SeyedSina Hosseini; Eric Bharucha; Denise M. Tremblay; Sylvain Moineau; Younès Messaddeq; Jacques Corbeil; Benoit Gosselin (EMBC, 2020)

Applying PySCMGroup to Breast Cancer Biomarkers Discovery. - Mazid Abiodoun Osseni; Prudencio Tossou; Jacques Corbeil; François Laviolette (BIOINFORMATICS, 2021)

Optimization & Characterization of Interdigitated Electrodes for Microbial Growth Monitoring. - SeyedSina Hosseini; Partha Sarati Das; Gabriel Gagnon-Turcotte; P. BL-George; Younès Messaddeq; Jacques Corbeil; Benoit Gosselin (EMBC, 2021)

On the robustness of generalization of drug-drug interaction models. - Rogia Kpanou; Mazid Abiodoun Osseni; Prudencio Tossou; François Laviolette; Jacques Corbeil (BMC Bioinform., 2021)

Exploring polypharmacy with artificial intelligence: data analysis protocol. - Caroline Sirois; Richard Khoury; Audrey Durand; Pierre-Luc Déziel; Olga Bukhtiyarova; Yohann Chiu; Denis Talbot; Alexandre Bureau; Philippe Després; Christian Gagné 001; François Laviolette; Anne-Marie Savard; et al. (BMC Medical Informatics Decis. Mak., 2021)

Integrating and reporting full multi-view supervised learning experiments using SuMMIT. - Baptiste Bauvin; Jacques Corbeil; Dominique Benielli; Sokol Koço; Cécile Capponi (LIDTA, 2022)

RandomSCM: interpretable ensembles of sparse classifiers tailored for omics data. - Thibaud Godon; Pier-Luc Plante; Baptiste Bauvin; Elina Francovic-Fontaine; Alexandre Drouin; Jacques Corbeil (CoRR, 2022)

MOT: A Multi-Omics Transformer for Multiclass Classification Tumour Types Predictions. - Mazid Abiodoun Osseni; Prudencio Tossou; François Laviolette; Jacques Corbeil (BIOINFORMATICS, 2023)

Sample Boosting Algorithm (SamBA) - An interpretable greedy ensemble classifier based on local expertise for fat data. - Baptiste Bauvin; Cécile Capponi; Florence Clerc; Pascal Germain; Sokol Koço; Jacques Corbeil (UAI, 2023)

Invariant Causal Set Covering Machines. - Thibaud Godon; Baptiste Bauvin; Pascal Germain; Jacques Corbeil; Alexandre Drouin (CoRR, 2023)

Learning self-supervised molecular representations for drug-drug interaction prediction. - Rogia Kpanou; Patrick Dallaire; Elsa Rousseau; Jacques Corbeil (BMC Bioinform., 2024)