Visualization of comparative genomic analyses by BLAST score ratio. - David A. Rasko; Garry S. A. Myers; Jacques Ravel (BMC Bioinform., 2005)

Evaluation of vaginal microbiome equilibrium states identifies microbial parameters linked to resilience after menses and antibiotic therapy. - Christina Y. Lee; Jenna Diegel; Michael T. France; Jacques Ravel; Kelly B. Arnold (PLoS Comput. Biol., 2023)

SpeciateIT and vSpeciateDB: novel, fast, and accurate per sequence 16S rRNA gene taxonomic classification of vaginal microbiota. - Johanna B. Holm; Pawel Gajer; Jacques Ravel (BMC Bioinform., 2024)

The Geometry of Machine Learning Models. - Pawel Gajer; Jacques Ravel (CoRR, 2025)