Resolution of haplotypes and haplotype frequencies from SNP genotypes of pooled samples. - Itsik Pe'er; Jacques S. Beckmann (RECOMB, 2003)

Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs. - Tamar Barzuza; Jacques S. Beckmann; Ron Shamir; Itsik Pe'er (CPM, 2004)

FoldIndex copyright: a simple tool to predict whether a given protein sequence is intrinsically unfolded. - Jaime Prilusky; Clifford E. Felder; Tzviya Zeev-Ben-Mordehai; Edwin H. Rydberg; Orna Man; Jacques S. Beckmann; Israel Silman; Joel L. Sussman (Bioinform., 2005)

Computational Problems in Perfect Phylogeny Haplotyping: Typing without Calling the Allele. - Tamar Barzuza; Jacques S. Beckmann; Ron Shamir; Itsik Pe'er (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

New quality measure for SNP array based CNV detection. - A. Macé; M. A. Tuke; Jacques S. Beckmann; L. Lin; S. Jacquemont; Michael N. Weedon; Alexandre Reymond; Zoltán Kutalik (Bioinform., 2016)