Ergatis: a web interface and scalable software system for bioinformatics workflows. - Joshua Orvis; Jonathan Crabtree; Kevin Galens; Aaron Gussman; Jason M. Inman; Eduardo Lee; Sreenath Nampally; David R. Riley 002; Jaideep P. Sundaram; Victor Felix; Brett Whitty; Anup Mahurkar; et al. (Bioinform., 2010)

VIGOR, an annotation program for small viral genomes. - Shiliang Wang; Jaideep P. Sundaram; David Spiro (BMC Bioinform., 2010)

Pathema: a clade-specific bioinformatics resource center for pathogen research. - Lauren M. Brinkac; Tanja Davidsen; Erin Beck; Anuradha Ganapathy; Elisabet Caler; Robert J. Dodson; A. Scott Durkin; Derek M. Harkins; Hernan Lorenzi; Ramana Madupu; Yinong Sebastian; Susmita Shrivastava; et al. (Nucleic Acids Res., 2010)

Bovine Genome Database: integrated tools for genome annotation and discovery. - Christopher P. Childers; Justin T. Reese; Jaideep P. Sundaram; Donald C. Vile; C. Michael Dickens; Kevin L. Childs; Hanni Salih; Anna K. Bennett; Darren E. Hagen; David L. Adelson; Christine G. Elsik (Nucleic Acids Res., 2011)

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera. - Monica C. Munoz-Torres; Justin T. Reese; Christopher P. Childers; Anna K. Bennett; Jaideep P. Sundaram; Kevin L. Childs; Juan M. Anzola; Natalia Milshina; Christine G. Elsik (Nucleic Acids Res., 2011)

VIGOR extended to annotate genomes for additional 12 different viruses. - Shiliang Wang; Jaideep P. Sundaram; Timothy B. Stockwell (Nucleic Acids Res., 2012)