GaudiMM: A modular multi-objective platform for molecular modeling. - Jaime Rodríguez-Guerra Pedregal; Giuseppe Sciortino; Jordi Guasp; Martí Municoy; Jean-Didier Maréchal (J. Comput. Chem., 2017)

PyChimera: use UCSF Chimera modules in any Python 2.7 project. - Jaime Rodríguez-Guerra Pedregal; Jean-Didier Maréchal (Bioinform., 2018)

Prediction of the interaction of metallic moieties with proteins: An update for protein-ligand docking techniques. - Giuseppe Sciortino; Jaime Rodríguez-Guerra Pedregal; Agustí Lledós; Eugenio Garribba; Jean-Didier Maréchal (J. Comput. Chem., 2018)

ESIgen: Electronic Supporting Information Generator for Computational Chemistry Publications. - Jaime Rodríguez-Guerra Pedregal; Pablo Gómez-Orellana; Jean-Didier Maréchal (J. Chem. Inf. Model., 2018)

GARLEEK: Adding an extra flavor to ONIOM. - Jaime Rodríguez-Guerra Pedregal; Ignacio Funes-Ardoiz; Giuseppe Sciortino; José-Emilio Sánchez-Aparicio; Gregori Ujaque; Agustí Lledós; Jean-Didier Maréchal; Feliu Maseras (J. Comput. Chem., 2019)