scOrange - a tool for hands-on training of concepts from single-cell data analytics. - Martin Strazar; Lan Zagar; Jaka Kokosar; Vesna Tanko; Ales Erjavec; Pavlin G. Policar; Anze Staric; Janez Demsar; Gad Shaulsky; Vilas Menon; Andrew Lemire; Anup Parikh; et al. (Bioinform., 2019)

Ranking of Survival-Related Gene Sets Through Integration of Single-Sample Gene Set Enrichment and Survival Analysis. - Martin Spendl; Jaka Kokosar; Ela Praznik; Luka Ausec; Blaz Zupan (AIME, 2023)

Gene Interactions in Survival Data Analysis: A Data-Driven Approach Using Restricted Mean Survival Time and Literature Mining. - Jaka Kokosar; Martin Spendl; Blaz Zupan (DS, 2023)

Large scale gene set ranking for survival-related gene sets. - Martin Spendl; Jaka Kokosar; Ela Praznik; Luka Ausec; Miha Stajdohar; Blaz Zupan (Artif. Intell. Medicine, 2025)