Ligand-Info, Searching for Similar Small Compounds Using Index Profiles. - Marcin von Grotthuss; Jakub Pas; Leszek Rychlewski (Bioinform., 2003)

ORFeus: detection of distant homology using sequence profiles and predicted secondary structure. - Krzysztof Ginalski; Jakub Pas; Lucjan Stanislaw Wyrwicz; Marcin von Grotthuss; Janusz M. Bujnicki; Leszek Rychlewski (Nucleic Acids Res., 2003)

The PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries. - Daniel Fischer 001; Jakub Pas; Leszek Rychlewski (Bioinform., 2004)

ELM: the status of the 2010 eukaryotic linear motif resource. - Cathryn M. Gould; Francesca Diella; Allegra Via; Pål Puntervoll; Christine Gemünd; Sophie Chabanis-Davidson; Sushama Michael; Ahmed Sayadi; Jan Christian Bryne; Claudia Chica; Markus Seiler; Norman E. Davey; et al. (Nucleic Acids Res., 2010)