CppyABM: An open-source agent-based modeling library to integrate C++ and Python. - Jalil Nourisa; Berit Zeller-Plumhoff; Regine Willumeit-Römer (Softw. Pract. Exp., 2022)

The osteogenetic activities of mesenchymal stem cells in response to Mg2+ ions and inflammatory cytokines: a numerical approach using fuzzy logic controllers. - Jalil Nourisa; Berit Zeller-Plumhoff; Regine Willumeit-Römer (PLoS Comput. Biol., 2022)

The application of agent-based modeling and fuzzy-logic controllers for the study of magnesium biomaterials - Jalil Nourisa (2023)

A benchmark for prediction of transcriptomic responses to chemical perturbations across cell types. - Artur Szalata; Andrew Benz; Robrecht Cannoodt; Mauricio Cortes; Jason Fong; Sunil Kuppasani; Richard Lieberman; Tianyu Liu; Javier Mas-Rosario; Rico Meinl; Jalil Nourisa; Jared Tumiel; et al. (NeurIPS, 2024)