Spectral clustering of protein sequences. - Alberto Paccanaro; Chakra Chennubhotla 001; James A. Casbon; Mansoor A. S. Saqi (IJCNN, 2003)

Analysis of superfamily specific profile-profile recognition accuracy. - James A. Casbon; Mansoor A. S. Saqi (BMC Bioinform., 2004)

S4: structure-based sequence alignments of SCOP superfamilies. - James A. Casbon; Mansoor A. S. Saqi (Nucleic Acids Res., 2005)

A high level interface to SCOP and ASTRAL implemented in Python. - James A. Casbon; Gavin E. Crooks; Mansoor A. S. Saqi (BMC Bioinform., 2006)

On single and multiple models of protein families for the detection of remote sequence relationships. - James A. Casbon; Mansoor A. S. Saqi (BMC Bioinform., 2006)

Functional diversity within protein superfamilies. - James A. Casbon; Mansoor A. S. Saqi (J. Integr. Bioinform., 2006)