JPred: a consensus secondary structure prediction server. - James A. Cuff; Michele E. Clamp; Asim S. Siddiqui; M. Finlay; Geoffrey J. Barton (Bioinform., 1998)

ProtEST: protein multiple sequence alignments from expressed sequence tags. - James A. Cuff; Ewan Birney; Michele E. Clamp; Geoffrey J. Barton (Bioinform., 2000)

The Ensembl genome database project. - Tim J. P. Hubbard; Daniel Barker; Ewan Birney; Graham Cameron; Yuan Chen 007; Laura Clarke; Tony Cox 001; James A. Cuff; Val Curwen; Thomas A. Down; Richard Durbin; Eduardo Eyras; et al. (Nucleic Acids Res., 2002)

Ensembl 2002: accommodating comparative genomics. - Michele E. Clamp; T. Daniel Andrews; Daniel Barker; Paul Bevan 001; Graham Cameron; Yuan Chen 007; Laura Clarke; Tony Cox 001; James A. Cuff; Val Curwen; Thomas A. Down; Richard Durbin; et al. (Nucleic Acids Res., 2003)

The Jalview Java alignment editor. - Michele E. Clamp; James A. Cuff; Stephen M. J. Searle; Geoffrey J. Barton (Bioinform., 2004)

Ensembl 2004. - Ewan Birney; T. Daniel Andrews; Paul Bevan 001; Mario Cáccamo; Graham Cameron; Yuan Chen 007; Laura Clarke; Guy Coates; Tony Cox 001; James A. Cuff; Val Curwen; Tim Cutts; et al. (Nucleic Acids Res., 2004)

Detection and mapping of irrigated farmland in Canterbury, New Zealand. - David Pairman; Stella E. Belliss; James A. Cuff; Stephen J. McNeill (IGARSS, 2011)

Classifying agricultural land uses with time series of satellite images. - Heather C. North; David Pairman; Stella E. Belliss; James A. Cuff (IGARSS, 2012)

Spectral classification of crop groups for land use identification with temporally sparse time-series satellite images. - Heather C. North; David Pairman; Stella E. Belliss; Stephen J. McNeill; James A. Cuff; Zach Hill (IGARSS, 2013)