Application of semantic annotation for quality insurance in biosystematics publishing. - Hong Cui; Chunshui Yu; James A. Macklin (ASIST, 2009)

Filtered-Push: A Map-Reduce Platform for Collaborative Taxonomic Data Management. - Zhimin Wang; Hui Dong; Maureen Kelly; James A. Macklin; Paul J. Morris; Robert A. Morris 002 (CSIE (3), 2009)

OTO: Ontology term organizer. - Fengqiong Huang; James A. Macklin; Paul J. Morris; Partha Pratim Sanyal; Robert A. Morris 002; Hong Cui (ASIST, 2012)

Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources. - Ramona L. Walls; Hong Cui; James A. Macklin; Chris Mungall; Laurel Cooper; Dennis W. Stevenson; Pankaj Jaiswal (ICBO, 2012)

Kurator: A Kepler Package for Data Curation Workflows. - Lei Dou; G. Cao; Paul J. Morris; Robert A. Morris 002; Bertram Ludäscher; James A. Macklin; James Hanken (ICCS, 2012)

Towards Automated Design, Analysis and Optimization of Declarative Curation Workflows. - Tianhong Song; Sven Köhler 003; Bertram Ludäscher; James Hanken; Maureen Kelly; David Lowery; James A. Macklin; Paul J. Morris; Robert A. Morris 002 (Int. J. Digit. Curation, 2014)

OTO: Ontology Term Organizer. - Fengqiong Huang; James A. Macklin; Hong Cui; Heather A. Cole; Lorena Endara (BMC Bioinform., 2015)

Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building. - Hong Cui; Dongfang Xu; Steven S. Chong; Martin Ramirez; Thomas Rodenhausen; James A. Macklin; Bertram Ludäscher; Robert A. Morris 002; Eduardo M. Soto; Nicolás Mongiardino Koch (BMC Bioinform., 2016)

'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. - Ian Braun; James P. Balhoff; Tanya Z. Berardini; Laurel Cooper; Georgios V. Gkoutos; Lisa C. Harper; Eva Huala; Pankaj Jaiswal; Toni Kazic; Hilmar Lapp; James A. Macklin; Chelsea D. Specht; et al. (Application of Semantic Technology in Biodiversity Science, 2018)

Developing community phenotype ontologies: Understanding users' preferences. - Limin Zhang 001; Zuleima Cota; Hong Cui; Hsin-liang Oliver Chen; Bruce Ford; Joel Sach; Jocelyn E. Pender; James A. Macklin; Anton Reznicek; Julian R. Starr (ASIST, 2019)

Enabling Authors to Produce Computable Phenotype Measurements: Usability Studies on the Measurement Recorder. - Limin Zhang 001; Hong Cui; Bruce Ford; Hsin-liang Cheng; James A. Macklin; Anton Reznicek; Julian R. Starr (HCI (48), 2020)

Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study. - Limin Zhang 001; Xingyi Yang; Zuleima Cota; Hong Cui; Bruce Ford; Hsin-liang Oliver Chen; James A. Macklin; Anton Reznicek; Julian R. Starr (Database J. Biol. Databases Curation, 2021)

Authors' attitude toward adopting a new workflow to improve the computability of phenotype publications. - Hong Cui; Bruce Ford; Julian R. Starr; Anton Reznicek; Limin Zhang 001; James A. Macklin (Database J. Biol. Databases Curation, 2022)

Helping authors produce FAIR taxonomic data: evaluation of an author-driven phenotype data production prototype. - Limin Zhang 001; Julian R. Starr; Bruce Ford; Anton Reznicek; Yuxuan Zhou; Étienne Léveillé-Bourret; Étienne Lacroix-Carignan; Jacques Cayouette; Tyler W. Smith; Donald Sutherland; Paul Catling; Jeffery M. Saarela; et al. (Database J. Biol. Databases Curation, 2025)