Boundary description and measurement with sub-pixel/-voxel accuracy. - James C. Mullikin (ICPR (3), 1992)

The vector distance transform in two and three dimensions. - James C. Mullikin (CVGIP Graph. Model. Image Process., 1992)

A probabilistic approach for long read-length DNA sequence analysis. - C. G. Molina; James C. Mullikin (NNSP, 2002)

ssahaSNP A Polymorphism Detection Tool on a Whole Genome Scale. - Zemin Ning; Mario Cáccamo; James C. Mullikin (CSB Workshops, 2005)

StellaBase: The Nematostella vectensis Genomics Database. - James C. Sullivan; Joseph F. Ryan 003; James A. Watson; Jeramy Webb; James C. Mullikin; Daniel Rokhsar; John R. Finnerty (Nucleic Acids Res., 2006)

VarSifter: Visualizing and analyzing exome-scale sequence variation data on a desktop computer. - Jamie K. Teer; Eric D. Green; James C. Mullikin; Leslie G. Biesecker (Bioinform., 2012)

Shimmer: detection of genetic alterations in tumors using next-generation sequence data. - Nancy F. Hansen; Jared J. Gartner; Lan Mei; Yardena Samuels; James C. Mullikin (Bioinform., 2013)

QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments. - Stephen Hartley; James C. Mullikin (BMC Bioinform., 2015)

Evaluation of variant detection software for pooled next-generation sequence data. - Howard Huang; James C. Mullikin; Nancy F. Hansen (BMC Bioinform., 2015)