Robust Persistence and Permanence of Polynomial and Power Law Dynamical Systems. - James D. Brunner; Gheorghe Craciun (SIAM J. Appl. Math., 2018)

Minimizing the number of optimizations for efficient community dynamic flux balance analysis. - James D. Brunner; Nicholas Chia (PLoS Comput. Biol., 2020)

Inferring microbial interactions with their environment from genomic and metagenomic data. - James D. Brunner; Laverne A. Gallegos-Graves; Marie E. Kroeger (PLoS Comput. Biol., 2023)