Michigan molecular interactions r2: from interacting proteins to pathways. - V. Glenn Tarcea; Terry E. Weymouth; Alexander S. Ade; Aaron V. Bookvich; Jing Gao; Vasudeva Mahavisno; Zach Wright; Adriane Chapman; Magesh Jayapandian; Arzucan Özgür; Yuanyuan Tian 001; James D. Cavalcoli; et al. (Nucleic Acids Res., 2009)

Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks. - Jing Gao; V. Glenn Tarcea; Alla Karnovsky; Barbara R. Mirel; Terry E. Weymouth; Christopher W. Beecher; James D. Cavalcoli; Brian D. Athey; Gilbert S. Omenn; Charles F. Burant; H. V. Jagadish (Bioinform., 2010)

ConceptGen: a gene set enrichment and gene set relation mapping tool. - Maureen A. Sartor; Vasudeva Mahavisno; Venkateshwar G. Keshamouni; James D. Cavalcoli; Zach Wright; Alla Karnovsky; Rork Kuick; H. V. Jagadish; Barbara Mirel; Terry E. Weymouth; Brian D. Athey; Gilbert S. Omenn (Bioinform., 2010)

A genetic network model of cellular responses to lithium treatment and cocaine abuse in bipolar disorder. - Richard C. McEachin; Haiming Chen; Maureen A. Sartor; Scott F. Saccone; Benjamin J. Keller; Alan R. Prossin; James D. Cavalcoli; Melvin G. McInnis (BMC Syst. Biol., 2010)

Convergence of genetic influences in comorbidity. - Richard C. McEachin; Keerthi S. Sannareddy; James D. Cavalcoli; Alla Karnovsky; Jacqueline M. Vink; Maureen A. Sartor (BMC Bioinform., 2012)

The NIH National Center for Integrative Biomedical Informatics (NCIBI). - Brian D. Athey; James D. Cavalcoli; H. V. Jagadish; Gilbert S. Omenn; Barbara Mirel; Matthias Kretzler; Charles F. Burant; Raphael D. Isokpehi; Charles DeLisi (J. Am. Medical Informatics Assoc., 2012)

A bioinformatics approach reveals novel interactions of the OVOL transcription factors in the regulation of epithelial - mesenchymal cell reprogramming and cancer progression. - Hernan Roca; Manjusha Pande; Jeffrey S. Huo; James Hernandez; James D. Cavalcoli; Kenneth J. Pienta; Richard C. McEachin (BMC Syst. Biol., 2014)