Feature Selection using a Random Forests Classifier for the Integrated Analysis of Multiple Data Types. - David M. Reif; Alison A. Motsinger; Brett A. McKinney; James E. Crowe Jr.; Jason H. Moore (CIBCB, 2006)

Evaporative cooling feature selection for genotypic data involving interactions. - Brett A. McKinney; David M. Reif; Bill C. White; James E. Crowe Jr.; Jason H. Moore (Bioinform., 2007)

Human Germline Antibody Gene Segments Encode Polyspecific Antibodies. - Jordan R. Willis; Bryan S. Briney; Samuel L. DeLuca; James E. Crowe Jr.; Jens Meiler (PLoS Comput. Biol., 2013)

Proof of principle for epitope-focused vaccine design. - Bruno E. Correia; John T. Bates; Rebecca J. Loomis; Gretchen Baneyx; Chris Carrico; Joseph G. Jardine; Peter Rupert; Colin E. Correnti; Oleksandr Kalyuzhniy; Vinayak Vittal; Mary J. Connell; Eric Stevens; et al. (Nat., 2014)

Design of Protein Multi-specificity Using an Independent Sequence Search Reduces the Barrier to Low Energy Sequences. - Alexander M. Sevy; Tim M. Jacobs; James E. Crowe Jr.; Jens Meiler (PLoS Comput. Biol., 2015)

Integrating linear optimization with structural modeling to increase HIV neutralization breadth. - Alexander M. Sevy; Swetasudha Panda; James E. Crowe Jr.; Jens Meiler; Yevgeniy Vorobeychik (PLoS Comput. Biol., 2018)

Immune repertoire fingerprinting by principal component analysis reveals shared features in subject groups with common exposures. - Alexander M. Sevy; Cinque S. Soto; Robin G. Bombardi; Jens Meiler; James E. Crowe Jr. (BMC Bioinform., 2019)

PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST. - Cinque S. Soto; Jessica A. Finn; Jordan R. Willis; Samuel B. Day; Robert S. Sinkovits; Taylor Jones; Samuel Schmitz; Jens Meiler; Andre Branchizio; James E. Crowe Jr. (BMC Bioinform., 2020)

Multi-state design of flexible proteins predicts sequences optimal for conformational change. - Marion F. Sauer; Alexander M. Sevy; James E. Crowe Jr.; Jens Meiler (PLoS Comput. Biol., 2020)

ClonoMatch: a tool for identifying homologous immunoglobulin and T-cell receptor sequences in large databases. - Taylor Jones; Samuel B. Day; Luke Myers; James E. Crowe Jr.; Cinque S. Soto (Bioinform., 2021)

Computational epitope mapping of class I fusion proteins using low complexity supervised learning methods. - Marion F. S. Fischer; James E. Crowe Jr.; Jens Meiler (PLoS Comput. Biol., 2022)