Transaction Management Support in the VMS Operating System Kernel. - William A. Laing; James E. Johnson; Robert V. Landau (Digit. Tech. J., 1991)

The Structure of the OpenVMS Management Station. - James E. Johnson (Digit. Tech. J., 1994)

Overview of the Spiralog File System. - James E. Johnson; William A. Laing (Digit. Tech. J., 1996)

PANAL: an integrated resource for Protein sequence ANALysis. - Kevin A. T. Silverstein; Alan Kilian; John L. Freeman; James E. Johnson; Ihab A. Awad; Ernest F. Retzel (Bioinform., 2000)

MetaFam: a unified classification of protein families. II. Schema and query capabilities. - Elizabeth Shoop; Kevin A. T. Silverstein; James E. Johnson; Ernest F. Retzel (Bioinform., 2001)

MetaFam: a unified classification of protein families. I. Overview and statistics. - Kevin A. T. Silverstein; Elizabeth Shoop; James E. Johnson; Ernest F. Retzel (Bioinform., 2001)

The MetaFam Server: a comprehensive protein family resource. - Kevin A. T. Silverstein; Elizabeth Shoop; James E. Johnson; Alan Kilian; John L. Freeman; Timothy M. Kunau; Ihab A. Awad; Margaret Mayer; Ernest F. Retzel (Nucleic Acids Res., 2001)

TableView: Portable Genomic Data Visualization. - James E. Johnson; Martina V. Stromvik; Kevin A. T. Silverstein; John A. Crow; Elizabeth Shoop; Ernest F. Retzel (Bioinform., 2003)

MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptome. - Anne-Françoise J. Lamblin; John A. Crow; James E. Johnson; Kevin A. T. Silverstein; Timothy M. Kunau; Alan Kilian; Diane Benz; Martina V. Stromvik; Gabriella Endré; Kathryn A. VandenBosch; Douglas R. Cook; Nevin D. Young; et al. (Nucleic Acids Res., 2003)

EOS Aura atmospheric chemistry data products. - James E. Johnson; Suraiya P. Ahmad (IGARSS, 2004)

Formal Specification of a Web Services Protocol. - James E. Johnson; David E. Langworthy; Leslie Lamport; Friedrich H. Vogt (WSFM, 2004)

MMuFLR: missense mutation and frameshift location reporter. - Susan K. Rathe; James E. Johnson; Kevin A. T. Silverstein; Jesse J. Erdmann; Adrienne L. Watson; Flavia E. Popescu; John R. Ohlfest; David A. Largaespada (Bioinform., 2013)

Wrangling Galaxy's reference data. - Daniel J. Blankenberg; James E. Johnson; The Galaxy Team; James Taylor 001; Anton Nekrutenko (Bioinform., 2014)

Chapter 13. Using Galaxy for Proteomics. - Candace R. Guerrero; Pratik D. Jagtap; James E. Johnson; Timothy J. Griffin (Proteome Informatics, 2016)

Improve your Galaxy text life: The Query Tabular Tool. - James E. Johnson; Praveen Kumar; Caleb Easterly; Mark Esler; Subina P. Mehta; Arthur C. Eschenlauer; Adrian D. Hegeman; Pratik D. Jagtap; Timothy J. Griffin (F1000Research, 2018)

Closed-Loop Control of a Magnetically Actuated Fiber-Coupled Laser for Computer-Assisted Laser Microsurgery. - Hamed Mohammadbagherpoor; Alperen Acemoglu; Leonardo S. Mattos; Darwin G. Caldwell; James E. Johnson; John Muth; Edward Grant (ICAR, 2019)

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. - Subina P. Mehta; Marie Crane; Emma Leith; Bérénice Batut; Saskia D. Hiltemann; Magnus Ø. Arntzen; Benoît Josef Kunath; Francesco Delogu; Ray Sajulga; Praveen Kumar; James E. Johnson; Timothy J. Griffin; et al. (F1000Research, 2021)