Automated Assignment of Medical Subject Headings. - Stuart J. Nelson; Alan R. Aronson; Tamas E. Doszkocs; W. John Wilbur; Olivier Bodenreider; H. Florence Chang; James G. Mork; Alexa T. McCray (AMIA, 1999)

Analysis of biomedical text for chemical names: a comparison of three methods. - W. John Wilbur; George F. Hazard Jr.; Guy Divita; James G. Mork; Alan R. Aronson; Allen C. Browne (AMIA, 1999)

The NLM Indexing Initiative. - Alan R. Aronson; Olivier Bodenreider; Florence Chang; Susanne M. Humphrey; James G. Mork; Stuart J. Nelson; Thomas C. Rindflesch; W. John Wilbur (AMIA, 2000)

Text-based discovery in biomedicine: the architecture of the DAD-system. - Marc Weeber; Henny Klein; Alan R. Aronson; James G. Mork; Lolkje T. W. de Jong-van den Berg; Rein Vos (AMIA, 2000)

Developing a test collection for biomedical word sense disambiguation. - Marc Weeber; James G. Mork; Alan R. Aronson (AMIA, 2001)

Finding UMLS Metathesaurus concepts in MEDLINE. - Suresh Srinivasan; Thomas C. Rindflesch; William T. Hole; Alan R. Aronson; James G. Mork (AMIA, 2002)

Gene Indexing: Characterization and Analysis of NLM's GeneRIFs. - Joyce A. Mitchell; Alan R. Aronson; James G. Mork; Lillian C. Folk; Susanne M. Humphrey; Janice M. Ward (AMIA, 2003)

Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. - Mehmet Kayaalp 002; Alan R. Aronson; Susanne M. Humphrey; Nicholas C. Ide; Lorraine K. Tanabe; Lawrence H. Smith; Dina Demner-Fushman; Russell F. Loane; James G. Mork; Olivier Bodenreider (TREC, 2003)

The NLM Indexing Initiative's Medical Text Indexer. - Alan R. Aronson; James G. Mork; Clifford W. Gay; Susanne M. Humphrey; Willie J. Rogers (MedInfo, 2004)

Application of a Medical Text Indexer to an Online Dermatology Atlas. - George R. Kim; Alan R. Aronson; James G. Mork; Bernard A. Cohen; Christoph U. Lehmann (MedInfo, 2004)

Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. - Alan R. Aronson; Susanne M. Humphrey; Nicholas C. Ide; Won Kim 003; Russell F. Loane; James G. Mork; Lawrence H. Smith; Lorraine K. Tanabe; W. John Wilbur; Natalie Xie; Dina Demner-Fushman; Hongfang Liu (TREC, 2004)

Evaluation of French and English MeSH Indexing Systems with a Parallel Corpus. - Aurélie Névéol; James G. Mork; Alan R. Aronson; Stéfan Jacques Darmoni (AMIA, 2005)

Fine-Grained Indexing of the Biomedical Literature: MeSH Subheading Attachment for a MEDLINE Indexing Tool. - Aurélie Névéol; Sonya E. Shooshan; James G. Mork; Alan R. Aronson (AMIA, 2007)

From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. - Alan R. Aronson; Olivier Bodenreider; Dina Demner-Fushman; Kin Wah Fung; Vivian K. Lee; James G. Mork; Aurélie Névéol; Lee B. Peters; Willie J. Rogers (BioNLP@ACL, 2007)

Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations. - Aurélie Névéol; James G. Mork; Alan R. Aronson (BioNLP@ACL, 2007)

Combining Resources to Find Answers to Biomedical Questions. - Dina Demner-Fushman; Susanne M. Humphrey; Nicholas C. Ide; Russell F. Loane; James G. Mork; Patrick Ruch; Miguel E. Ruiz; Lawrence H. Smith; W. John Wilbur; Alan R. Aronson (TREC, 2007)

Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing. - Alan R. Aronson; James G. Mork; Aurélie Névéol; Sonya E. Shooshan; Dina Demner-Fushman (AMIA, 2008)

Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'. - Aurélie Névéol; James G. Mork; Alan R. Aronson (Bioinform., 2009)

A recent advance in the automatic indexing of the biomedical literature. - Aurélie Névéol; Sonya E. Shooshan; Susanne M. Humphrey; James G. Mork; Alan R. Aronson (J. Biomed. Informatics, 2009)

Extracting Rx information from clinical narrative. - James G. Mork; Olivier Bodenreider; Dina Demner-Fushman; Rezarta Islamaj Dogan; François-Michel Lang; Zhiyong Lu; Aurélie Névéol; Lee B. Peters; Sonya E. Shooshan; Alan R. Aronson (J. Am. Medical Informatics Assoc., 2010)

UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. - Dina Demner-Fushman; James G. Mork; Sonya E. Shooshan; Alan R. Aronson (J. Biomed. Informatics, 2010)

Structured Abstracts in MEDLINE: Implementation Based on a Retrospective Cohort Study. - Anna Ripple; Lou Knecht; John Rozier; James G. Mork (AMIA, 2012)

MEDLINE MeSH indexing: lessons learned from machine learning and future directions. - Antonio Jimeno-Yepes; James G. Mork; Bartlomiej Wilkowski; Dina Demner-Fushman; Alan R. Aronson (IHI, 2012)

NLM at TREC 2012 Medical Records Track. - Dina Demner-Fushman; Swapna Abhyankar; Antonio Jimeno-Yepes; Russell F. Loane; François-Michel Lang; James G. Mork; Nicolas Ide; Alan R. Aronson (TREC, 2012)

A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning. - Antonio Jimeno-Yepes; James G. Mork; Dina Demner-Fushman; Alan R. Aronson (J. Comput. Sci. Eng., 2012)

Mining MEDLINE for problems associated with vitamin D. - Dina Demner-Fushman; James G. Mork; Alan R. Aronson (AMIA, 2013)

Comparison and combination of several MeSH indexing approaches. - Antonio Jimeno-Yepes; James G. Mork; Dina Demner-Fushman; Alan R. Aronson (AMIA, 2013)

Using the Argumentative Structure of Scientific Literature to Improve Information Access. - Antonio Jimeno-Yepes; James G. Mork; Alan R. Aronson (BioNLP@ACL, 2013)

Identifying Publication Types Using Machine Learning. - Antonio Jimeno-Yepes; James G. Mork; Alan R. Aronson (BioASQ@CLEF, 2013)

The NLM Medical Text Indexer System for Indexing Biomedical Literature. - James G. Mork; Antonio Jimeno-Yepes; Alan R. Aronson (BioASQ@CLEF, 2013)

MeSH indexing based on automatically generated summaries. - Antonio José Jimeno-Yepes; Laura Plaza; James G. Mork; Alan R. Aronson; Alberto Díaz 001 (BMC Bioinform., 2013)

GeneRIF indexing: sentence selection based on machine learning. - Antonio Jimeno-Yepes; J. Caitlin Sticco; James G. Mork; Alan R. Aronson (BMC Bioinform., 2013)

Vocabulary Density Method for Customized Indexing of MEDLINE Journals. - James G. Mork; Dina Demner-Fushman; Susan Schmidt; Alan R. Aronson (AMIA, 2014)

Recent Enhancements to the NLM Medical Text Indexer. - James G. Mork; Dina Demner-Fushman; Susan Schmidt; Alan R. Aronson (CLEF (Working Notes), 2014)

Extracting Characteristics of the Study Subjects from Full-Text Articles. - Dina Demner-Fushman; James G. Mork (AMIA, 2015)

Feature engineering for MEDLINE citation categorization with MeSH. - Antonio Jimeno-Yepes; Laura Plaza; Jorge Carrillo de Albornoz; James G. Mork; Alan R. Aronson (BMC Bioinform., 2015)

Resolving Hierarchical Ambiguity in Indexing Recommendations. - James G. Mork; Dina Demner-Fushman (AMIA, 2016)

12 years on - Is the NLM medical text indexer still useful and relevant? - James G. Mork; Alan R. Aronson; Dina Demner-Fushman (J. Biomed. Semant., 2017)

Finding medication doses in the literature. - Dina Demner-Fushman; James G. Mork; Willie J. Rogers; Sonya E. Shooshan; Laritza M. Rodriguez; Alan R. Aronson (AMIA, 2018)

Increasing UMLS Coverage and Reducing Ambiguity via Automated Creation of Synonymous Terms. - François-Michel Lang; James G. Mork; Dina Demner-Fushman; Alan R. Aronson (AMIA, 2018)

A High Recall Classifier for Selecting Articles for MEDLINE Indexing. - Alastair R. Rae; Max E. Savery; James G. Mork; Dina Demner-Fushman (AMIA, 2019)

Evaluation of System for Selective Indexing Classification. - Max E. Savery; Melanie Huston; James G. Mork; Olga Printseva; Susan Schmidt; Alastair R. Rae; Dina Demner-Fushman (AMIA, 2019)

Convolutional Neural Network for Automatic MeSH Indexing. - Alastair R. Rae; James G. Mork; Dina Demner-Fushman (PKDD/ECML Workshops (2), 2019)

Enhanced Features in the SPECIALIST Lexicon - Antonyms. - Chris J. Lu; Amanda Payne; James G. Mork (AMIA, 2020)

Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem. - Alastair R. Rae; David O. Pritchard; James G. Mork; Dina Demner-Fushman (AMIA, 2020)

The Unified Medical Language System SPECIALIST Lexicon and Lexical Tools: Development and applications. - Chris J. Lu; Amanda Payne; James G. Mork (J. Am. Medical Informatics Assoc., 2020)

Automatic recognition of figurative language in biomedical articles. - Dina Demner-Fushman; Willie J. Rogers; James G. Mork (SDU@AAAI, 2021)

Using Deep Neural Network Binary Classifiers to Infer MeSH Publication Types. - Victor Cid; James G. Mork (AMIA, 2021)

Hybrid Ensemble-Rule Algorithm for Improved MEDLINE® Sentence Boundary Detection. - Daniel X. Le; James G. Mork; Sameer Antani (AMIA, 2021)

Identifying Criteria for Antonym Generation from Collocates in Corpora. - Chris J. Lu; Amanda Payne; James G. Mork (AMIA, 2021)

A Neural Text Ranking Approach for Automatic MeSH Indexing. - Alastair R. Rae; James G. Mork; Dina Demner-Fushman (CLEF (Working Notes), 2021)

Proper filter usage to retrieve multiwords from the MEDLINE n-gram set: Reply to the Turki et al commentary "Enhancing filter-based parenthetic abbreviation extraction methods". - Chris J. Lu; Amanda Payne; James G. Mork (J. Am. Medical Informatics Assoc., 2021)

The road from manual to automatic semantic indexing of biomedical literature: a 10 years journey. - Anastasia Krithara; James G. Mork; Anastasios Nentidis; Georgios Paliouras (Frontiers Res. Metrics Anal., 2023)

The National Library of Medicine indexer assignment dataset: A new large-scale dataset for reviewer assignment research. - Alastair R. Rae; James G. Mork; Dina Demner-Fushman (J. Assoc. Inf. Sci. Technol., 2023)