Computational Challenges of Systems Biology. - Anthony Finkelstein; James Hetherington; Linzhong Li; Ofer Margoninski; Peter Saffrey; Robert M. Seymour; Anne Warner (Computer, 2004)

A Specification Language and a Framework for the Execution of Composite Models in Systems Biology. - Ofer Margoninski; Peter Saffrey; James Hetherington; Anthony Finkelstein; Anne Warner (Trans. Comp. Sys. Biology, 2006)

Addressing the challenges of multiscale model management in systems biology. - James Hetherington; Ian David Lockhart Bogle; Peter Saffrey; Ofer Margoninski; Linzhong Li; Marta Varela-Rey; Sachie Yamaji; Stephen Baigent; Jonathan Ashmore; K. Page; Robert M. Seymour; Anthony Finkelstein; et al. (Comput. Chem. Eng., 2007)

End-to-End Information Management for Systems Biology. - Peter Saffrey; Ofer Margoninski; James Hetherington; Marta Varela-Rey; Sachie Yamaji; Anthony Finkelstein; Ian David Lockhart Bogle; Anne Warner (Trans. Comp. Sys. Biology, 2007)

Preparing Scientific Application Software for Exascale Computing. - J. A. Åström; Adam C. Carter; James Hetherington; K. Ioakimidis; Erik Lindahl; G. Mozdzynski; Rupert W. Nash; Philipp Schlatter; Artur Signell; Jan Westerholm (PARA, 2012)

Enabling In Situ Pre- and Post-processing for Exascale Hemodynamic Simulations - A Co-design Study with the Sparse Geometry Lattice-Boltzmann Code HemeLB. - Fang Chen; Markus Flatken; Achim Basermann; Andreas Gerndt; James Hetherington; Timm Krüger; Gregor Matura; Rupert W. Nash (SC Companion, 2012)

Analyzing and Modeling the Performance of the HemeLB Lattice-Boltzmann Simulation Environment - Derek Groen; James Hetherington; Hywel B. Carver; Rupert W. Nash; Miguel O. Bernabeu; Peter V. Coveney (CoRR, 2012)

Coalesced communication: a design pattern for complex parallel scientific software - Hywel B. Carver; Derek Groen; James Hetherington; Rupert W. Nash; Miguel O. Bernabeu; Peter V. Coveney (CoRR, 2012)

Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations - Derek Groen; Joris Borgdorff; Carles Bona-Casas; James Hetherington; Rupert W. Nash; Stefan J. Zasada; Ilya Saverchenko; Mariusz Mamonski; Krzysztof Kurowski; Miguel O. Bernabeu; Alfons G. Hoekstra; Peter V. Coveney (CoRR, 2012)

Choice of blood rheology model has minor impact on computational assessment of shear stress mediated vascular risk - Miguel O. Bernabeu; Rupert W. Nash; Derek Groen; Hywel B. Carver; James Hetherington; Timm Krüger; Peter V. Coveney (CoRR, 2012)

Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis. - Miguel O. Bernabeu; Claudio A. Franco; Martin Jones; Jens H. Nielsen; Timm Krüger; Rupert W. Nash; Derek Groen; James Hetherington; Holger Gerhardt; Peter V. Coveney (CoRR, 2013)

Analysing and modelling the performance of the HemeLB lattice-Boltzmann simulation environment. - Derek Groen; James Hetherington; Hywel B. Carver; Rupert W. Nash; Miguel O. Bernabeu; Peter V. Coveney (J. Comput. Sci., 2013)

Summary of the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1). - Daniel S. Katz; Sou-Cheng T. Choi; Hilmar Lapp; Ketan Maheshwari; Frank Löffler 001; Matthew Turk 002; Marcus D. Hanwell; Nancy Wilkins-Diehr; James Hetherington; James Howison; Shel Swenson; Gabrielle Allen; et al. (CoRR, 2014)

An automated multiscale ensemble simulation approach for vascular blood flow. - Mohamed A. Itani; Ulf D. Schiller; Sebastian Schmieschek; James Hetherington; Miguel O. Bernabeu; Hoskote Chandrashekar; Fergus Robertson; Peter V. Coveney; Derek Groen (J. Comput. Sci., 2015)

Enabling Complex Analysis of Large-Scale Digital Collections: Humanities Research, High Performance Computing, and transforming access to British Library Digital Collections. - Melissa Terras; James Baker; James Hetherington; David Beavan; Anne Welsh; Helen O'Neill; Will Finley; Oliver Duke-Williams; Adam Farquhar (DH, 2016)

Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3). - Daniel S. Katz; Sou-Cheng T. Choi; Kyle E. Niemeyer; James Hetherington; Frank Löffler 001; Dan Gunter; Ray Idaszak; Steven R. Brandt; Mark A. Miller; Sandra Gesing; Nick D. Jones; Nic Weber; et al. (CoRR, 2016)

FabSim: Facilitating computational research through automation on large-scale and distributed e-infrastructures. - Derek Groen; Agastya Bhati; James J. Suter; James Hetherington; Stefan J. Zasada; Peter V. Coveney (Comput. Phys. Commun., 2016)

Critical care data processing tools. - Sinan Shi; David Pérez-Suárez; Steve K. Harris; Niall S. MacCallum; David Brealey; Mervyn Singer; James Hetherington (J. Open Source Softw., 2017)

Enabling complex analysis of large-scale digital collections: humanities research, high-performance computing, and transforming access to British Library digital collections. - Melissa Terras; James Baker; James Hetherington; David Beavan; Martin Zaltz Austwick; Anne Welsh; Helen O'Neill; Will Finley; Oliver Duke-Williams; Adam Farquhar (Digit. Scholarsh. Humanit., 2018)

defoe: A Spark-Based Toolbox for Analysing Digital Historical Textual Data. - Rosa Filgueira; Mariona Coll Ardanuy; Giovanni Colavizza; James Hetherington; Melissa Terras; Michael Jackson; Anna Roubícková; Amrey Krause; Ruth Ahnert; Tessa Hauswedell; Julianne Nyhan; David Beavan; et al. (eScience, 2019)

Simulating Imperial Dynamics and Conflict in the Ancient World. - Jim Madge; Giovanni Colavizza; James Hetherington; Weisi Guo; Alan Wilson 001 (CoRR, 2019)

Design choices for productive, secure, data-intensive research at scale in the cloud. - Diego Arenas; Jon Atkins; Clare Austin; David Beavan; Alvaro Cabrejas Egea; Stephen Carlysle-Davies; Ian Carter; Rob Clarke; James Cunningham; Tom Doel; Oliver Forrest; Evelina Gabasova; et al. (CoRR, 2019)

Using smart annotations to map the geography of newspapers. - Yann Ryan; Mariona Coll Ardanuy; Daniel van Strien; Kasra Hosseini; Kaspar Beelen; James Hetherington; Katherine McDonough; Barbara McGillivray; Mia Ridge; Olivia Vane; Daniel C. S. Wilson (DH, 2020)

3D Line Radiative Transfer & Synthetic Observations with Magritte. - Frederik De Ceuster; Thomas Ceulemans; Atulit Srivastava; Ward Homan; Jan Bolte; Jeremy Yates; Leen Decin; Peter Boyle; James Hetherington (J. Open Source Softw., 2022)

Living With Machines Database. - Griffith Reese; Adam Farquhar; Amy Krause; Andre Piza; Andrew Smith; Barbara McGillivray; Christina Last; Daniel van Strien; Daniel C. S. Wilson; David Beavan; Emma Griffin; Giovanni Colavizza; et al. (Zenodo, 2023)