Quantitative mouse brain phenotyping based on single and multispectral MR protocols. - Alexandra Badea; Sally L. Gewalt; Brian B. Avants; James J. Cook; G. Allan Johnson (NeuroImage, 2012)

Image-processing pipelines: applications in magnetic resonance histology. - G. Allan Johnson; Robert J. Anderson; James J. Cook; Christopher Long; Alexandra Badea (Image Processing, 2016)

An HPC Pipeline with Validation Framework for Small Animal Multivariate Brain Analysis (SAMBA). - Robert J. Anderson; James J. Cook; Natalie A. Delpratt; John C. Nouls; Bin Gu; James O. McNamara; Brian B. Avants; G. Allan Johnson; Alexandra Badea (CoRR, 2017)

Small Animal Multivariate Brain Analysis (SAMBA) - a High Throughput Pipeline with a Validation Framework. - Robert J. Anderson; James J. Cook; Natalie A. Delpratt; John C. Nouls; Bin Gu; James O. McNamara; Brian B. Avants; G. Allan Johnson; Alexandra Badea (Neuroinformatics, 2019)

A high-resolution interactive atlas of the human brainstem using magnetic resonance imaging. - Syed M. Adil; Evan Calabrese; Lefko T. Charalambous; James J. Cook; Shervin Rahimpour; Ahmet Fatih Atik; Gary P. Cofer; Beth A. Parente; G. Allan Johnson; Shivanand P. Lad; Leonard E. White (NeuroImage, 2021)

A multicontrast MR atlas of the Wistar rat brain. - G. Allan Johnson; Rick Laoprasert; Robert J. Anderson; Gary P. Cofer; James J. Cook; Forrest Pratson; Leonard E. White (NeuroImage, 2021)