Metropolis-Hastings Algorithm and Continuous Regression for finding Next-State Models of Protein Modification using Information Scores. - David J. John; Jacquelyn S. Fetrow; James L. Norris (BIBE, 2007)

Examining effects of variability on systems biology modeling algorithms. - Rachel A. Black; David J. John; Jacquelyn S. Fetrow; James L. Norris (BCB, 2010)

Comparison of Co-temporal Modeling Algorithms on Sparse Experimental Time Series Data Sets. - Edward E. Allen; James L. Norris; David J. John; Stan J. Thomas; William H. Turkett Jr.; Jacquelyn S. Fetrow (BIBE, 2010)

Probabilistic Signal Network Models from Multiple Replicates of Sparse Time-Course Data. - Kristopher L. Patton; David J. John; James L. Norris (BIBM, 2011)

Continuous Cotemporal Probabilistic Modeling of Systems Biology Networks from Sparse Data. - David J. John; Jacquelyn S. Fetrow; James L. Norris (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Bayesian probabilistic network modeling from multiple independent replicates. - Kristopher L. Patton; David J. John; James L. Norris (BMC Bioinform., 2012)

Hierarchical Probabilistic Interaction Modeling for Multiple Gene Expression Replicates. - Kristopher L. Patton; David J. John; James L. Norris; Daniel R. Lewis; Gloria K. Muday (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

A BCHC genetic algorithm model of cotemporal hierarchical Arabidopsis thaliana gene interactions. - Bree Ann LaPointe; David J. John; James L. Norris; Edward E. Allen; Alexandria F. Harkey; Joelle K. Muhlemann; Gloria K. Muday (BIBM, 2018)

Time Series Adjustment Enhancement of Hierarchical Modeling of Arabidopsis Thaliana Gene Interactions. - Edward E. Allen; John Farrell; Alexandria F. Harkey; David J. John; Gloria K. Muday; James L. Norris; Bo Wu (AlCoB, 2020)