Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling. - James Lara; Zoya Dimitrova; Yuri Khudyakov (ISBRA, 2008)

Artificial neural network for prediction of antigenic activity for a major conformational epitope in the hepatitis C virus NS3 protein. - James Lara; Robert M. Wohlhueter; Zoya Dimitrova; Yuri Khudyakov (Bioinform., 2008)

Network of coordinated substitutions in the Hepatitis B virus polymerase. - David S. Campo; Zoya Dimitrova; James Lara; Mike Purdy; Hong Thai; Sumathi Ramachandran; Lilia Ganova-Raeva; X. Zhai; Joseph C. Forbi; Chong-Gee Teo; Yuri Khudyakov (BIBM Workshops, 2011)

Modeling antigenic property of the hepatitis C virus NS3 protein. - James Lara; Yuri Khudyakov (BIBM Workshops, 2011)

Host-specific HCV evolution and response to the combined interferon and ribavirin therapy. - James Lara; John E. Tavis; Maureen J. Donlin; William M. Lee; He-Jun Yuan; Brian L. Pearlman; Gilberto Vaughan; Joseph C. Forbi; Guo-liang Xia; Yuri Khudyakov (BIBM Workshops, 2011)

Coordinated evolution of the Hepatitis B Virus Polymerase. - David S. Campo; Zoya Dimitrova; James Lara; Mike Purdy; Hong Thai; Sumathi Ramachandran; Lilia Ganova-Raeva; X. Zhai; Joseph C. Forbi; Chong-Gee Teo; Yuri Khudyakov (Silico Biol., 2012)

Association of antigenic properties to structure of the hepatitis C virus NS3 protein. - James Lara; Yuri Khudyakov (Silico Biol., 2012)

Coordinated evolution among hepatitis C virus genomic sites is coupled to host factors and resistance to interferon. - James Lara; John E. Tavis; Maureen J. Donlin; William M. Lee; He-Jun Yuan; Brian L. Pearlman; Gilberto Vaughan; Joseph C. Forbi; Guo-liang Xia; Yuri Khudyakov (Silico Biol., 2012)

Hepatitis C virus genetic association to rate of liver fibrosis progression. - James Lara; Yuri Khudyakov; F. Xavier López-Labrador; Fernando González-Candelas; Marina Berenguer (ICCABS, 2013)

Modeling genetic heterogeneity in Hepatitis C Virus hyper-variable region 1 infers demographic characteristics of infected hosts. - James Lara; Yury Kudhyakov (ICCABS, 2014)

Computational models of liver fibrosis progression for hepatitis C virus chronic infection. - James Lara; F. Xavier López-Labrador; Fernando González-Candelas; Marina Berenguer; Yuri Khudyakov (BMC Bioinform., 2014)

Highlights: Predicting the cross-immunoreactivity of hepatitis C virus hyper-variable region 1 peptides using polynomial neural networks. - James Lara; Yury Khudyakov; Livia Rossi; Gilberto Vaughan (ICCABS, 2015)

Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction. - Xiaojun Xu; Hong Thai; Kathryn M. Kitrinos; Guo-liang Xia; Anuj Gaggar; Matthew Paulson; Lilia Ganova-Raeva; Yury Khudyakov; James Lara (BMC Bioinform., 2016)