Computing ionization states of proteins with a detailed charge model. - Jan Antosiewicz; James M. Briggs; Adrian H. Elcock; Michael K. Gilson; James Andrew McCammon (J. Comput. Chem., 1996)

Prediction of pKas of Titratable Residues in Proteins Using a Poisson-Boltzmann Model of the Solute-Solvent System. - Jan Antosiewicz; Elzbieta Blachut-Okrasinska; Tomasz Grycuk; James M. Briggs; Stanislaw T. Wlodek; Bogdan Lesyng; James Andrew McCammon (Computational Molecular Dynamics, 1999)

Comparative molecular field analysis (CoMFA) study of epothilones - tubulin depolymerization inhibitors: Pharmacophore development using 3D QSAR methods. - Keun Woo Lee; James M. Briggs (J. Comput. Aided Mol. Des., 2001)

A structure-based design approach for the identification of novel inhibitors: application to an alanine racemase. - Gabriela Iurcu Mustata; James M. Briggs (J. Comput. Aided Mol. Des., 2002)

Efficient 3D Database Screening for Novel HIV-1 IN Inhibitors. - M. Letizia Barreca; Angela Rao; Laura De Luca; Maria Zappalà; Cristina Gurnari; Pietro Monforte; Erik De Clercq; Bénédicte Van Maele; Zeger Debyser; Myriam Witvrouw; James M. Briggs; Alba Chimirri (J. Chem. Inf. Model., 2004)

RNAdemocracy: an ensemble method for RNA secondary structure prediction using consensus scoring. - Benjamin L. Skidmore; James M. Briggs (Comput. Biol. Chem., 2019)

QM/MM study of N501 involved intermolecular interaction between SARS-CoV-2 receptor binding domain and antibody of human origin. - Yuemin Liu; Hana F. Sulaiman; Bruce R. Johnson; Rulong Ma; Yunxiang Gao; Harshica Fernando; Ananda Amarasekara; Andrea Ashley-Oyewole; Huajun Fan; Heaven N. Ingram; James M. Briggs (Comput. Biol. Chem., 2023)