Methodology capture: discriminating between the "best" and the rest of community practice. - James M. Eales; John W. Pinney; Robert D. Stevens 001; David L. Robertson (BMC Bioinform., 2008)

Biomedical Event Detection using Rules, Conditional Random Fields and Parse Tree Distances. - Farzaneh Sarafraz; James M. Eales; Reza Mohammadi; Jonathan E. Dickerson; David Robertson; Goran Nenadic (BioNLP@HLT-NAACL (Shared Task), 2009)

Mining semantic networks of bioinformatics e-resources from the literature. - Hammad Afzal; James M. Eales; Robert Stevens 001; Goran Nenadic (J. Biomed. Semant., 2011)

The Pharmacology Workspace: A Platform for Drug Discovery. - Alasdair J. G. Gray; Sune Askjaer; Christian Y. A. Brenninkmeijer; Kees Burger; Christine Chichester; James M. Eales; Chris T. A. Evelo; Carole A. Goble; Paul Groth; Lee Harland; Antonis Loizou; Steve Pettifer; et al. (ICBO, 2012)

OpenPHACTS Explorer 2: Bringing the Web to the Semantic Web. - Ian Dunlop; Rishi Ramgolam; Steve Pettifer; Alasdair J. G. Gray; James M. Eales; Carole A. Goble; Jan Velterop (SWAT4LS, 2013)