A killer micro attack on 3D neutron transport. - Milo R. Dorr; James M. Ferguson (Compcon, 1991)

Toward image-guided partial nephrectomy with the da Vinci robot: exploring surface acquisition methods for intraoperative re-registration. - James M. Ferguson; Leon Y. Cai; Alexander Reed; Michael A. Siebold; Smita De; S. Duke Herrell; Robert J. Webster III (Image-Guided Procedures, 2018)

SquiggleKit: a toolkit for manipulating nanopore signal data. - James M. Ferguson; Martin A. Smith (Bioinform., 2019)

A Recurrent Neural Network Approach to Roll Estimation for Needle Steering. - Maxwell Emerson; James M. Ferguson; Tayfun Efe Ertop; Margaret Rox; Josephine Granna; Michael Lester; Fabien Maldonado; Erin A. Gillaspie; Ron Alterovitz; Robert J. Webster III; Alan Kuntz (ISER, 2020)

Choosing Statistically Safe, Variable-Thickness Margins in Robot-Assisted Partial Nephrectomy. - Michael A. Siebold; James M. Ferguson; Bryn Pitt; Nicholas L. Kavoussi; Naren Nimmagadda; S. Duke Herrell; Robert J. Webster III (ISMR, 2020)

Integrating FireFly fluorescence into image guidance for the da Vinci robot. - Juyoung Kim; James M. Ferguson; Jason Shrand; Bryn Pitt; Josephine Granna; Naren Nimmagadda; Nicholas L. Kavoussi; S. Duke Herrell III; Robert J. Webster III (Image-Guided Procedures, 2021)

InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses. - James M. Ferguson; Hasindu Gamaarachchi; Thanh Nguyen; Alyne Gollon; Stephanie Tong; Chiara Aquilina-Reid; Rachel Bowen-James; Ira W. Deveson (Bioinform., 2022)

Unified robot and inertial sensor self-calibration. - James M. Ferguson; Tayfun Efe Ertop; S. Duke Herrell III; Robert J. Webster III (Robotica, 2023)

Unified Shape and External Load State Estimation for Continuum Robots. - James M. Ferguson; D. Caleb Rucker; Robert J. Webster III (IEEE Trans. Robotics, 2024)

DefFusionNet: Learning Multimodal Goal Shapes for Deformable Object Manipulation via a Diffusion-based Probabilistic Model. - Bao Thach; Siyeon Kim; Britton Jordan; Mohanraj Devendran Shanthi; Tanner Watts; Shing-Hei Ho; James M. Ferguson; Tucker Hermans; Alan Kuntz (CoRR, 2025)