Chaste: A test-driven approach to software development for biological modelling. - Joe Pitt-Francis; Pras Pathmanathan; Miguel O. Bernabeu; Rafel Bordas; Jonathan Cooper; Alexander G. Fletcher; Gary R. Mirams; Philip J. Murray; James M. Osborne; Alex Walter; S. Jonathan Chapman; Alan Garny; et al. (Comput. Phys. Commun., 2009)

A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath. - Sara-Jane Dunn; Paul L. Appleton; Scott A. Nelson; Inke S. Näthke; David Gavaghan; James M. Osborne (PLoS Comput. Biol., 2012)

Connecting Models to Data in Multiscale Multicellular Tissue Simulations. - Jonathan Cooper; James M. Osborne (ICCS, 2013)

Chaste: An Open Source C++ Library for Computational Physiology and Biology. - Gary R. Mirams; Christopher J. Arthurs; Miguel O. Bernabeu; Rafel Bordas; Jonathan Cooper; Alberto Corrias; Yohan Davit; Sara-Jane Dunn; Alexander G. Fletcher; Daniel G. Harvey; Megan E. Marsh; James M. Osborne; et al. (PLoS Comput. Biol., 2013)

The Free Energy Landscape of Dimerization of a Membrane Protein, NanC. - Thomas A. Dunton; Joseph E. Goose; David J. Gavaghan; Mark S. P. Sansom; James M. Osborne (PLoS Comput. Biol., 2014)

Ten Simple Rules for Effective Computational Research. - James M. Osborne; Miguel O. Bernabeu; Maria Bruna; Ben Calderhead; Jonathan Cooper; Neil Dalchau; Sara-Jane Dunn; Alexander G. Fletcher; Robin Freeman; Derek Groen; Bernhard Knapp; Greg J. McInerny; et al. (PLoS Comput. Biol., 2014)

Software development practices in academia: a case study comparison. - Derek Groen; Xiaohu Guo; James A. Grogan; Ulf D. Schiller; James M. Osborne (CoRR, 2015)

A parallel implementation of an off-lattice individual-based model of multicellular populations. - Daniel G. Harvey; Alexander G. Fletcher; James M. Osborne; Joe Pitt-Francis (Comput. Phys. Commun., 2015)

Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. - Bernhard Knapp; Rémi Bardenet; Miguel O. Bernabeu; Rafel Bordas; Maria Bruna; Ben Calderhead; Jonathan Cooper; Alexander G. Fletcher; Derek Groen; Bram Kuijper; Joanna Lewis; Greg J. McInerny; et al. (PLoS Comput. Biol., 2015)

The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt. - Sophie K. Kay; Heather A. Harrington; Sarah Shepherd; Keith Brennan; Trevor Dale; James M. Osborne; David J. Gavaghan; Helen M. Byrne (PLoS Comput. Biol., 2017)

Comparing individual-based approaches to modelling the self-organization of multicellular tissues. - James M. Osborne; Alexander G. Fletcher; Joe Pitt-Francis; Philip K. Maini; David J. Gavaghan (PLoS Comput. Biol., 2017)

A Fully Discrete Open Source Framework for the Simulation of Vascular Remodelling. - James M. Osborne; Miguel O. Bernabeu (EMBC, 2018)

Modelling the effect of subcellular mutations on the migration of cells in the colorectal crypt. - Lotte B. Romijn; Axel A. Almet; Chin Wee Tan; James M. Osborne (BMC Bioinform., 2020)

Chaste: Cancer, Heart and Soft Tissue Environment. - Fergus R. Cooper; Ruth E. Baker; Miguel O. Bernabeu; Rafel Bordas; Louise Bowler; Alfonso Bueno-Orovio; Helen M. Byrne; Valentina Carapella; Louie Cardone-Noott; Jonathan Cooper; Sara Dutta; Benjamin D. Evans; et al. (J. Open Source Softw., 2020)

A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness. - T. J. Sego; Josua Aponte-Serrano; Juliano Ferrari Gianlupi; Samuel R. Heaps; Kira Breithaupt; Lutz Brusch; Jessica R. Crawshaw; James M. Osborne; Ellen M. Quardokus; Richard K. Plemper; James A. Glazier (PLoS Comput. Biol., 2020)

A rigid body framework for multicellular modeling. - Phillip J. Brown; J. Edward F. Green; Benjamin J. Binder; James M. Osborne (Nat. Comput. Sci., 2021)

A simple history-dependent remeshing technique to increase finite element model stability in elastic surface deformations. - Jessica R. Crawshaw; Jennifer A. Flegg; James M. Osborne (J. Comput. Appl. Math., 2022)

Publisher Correction: A rigid body framework for multicellular modeling. - Phillip J. Brown; J. Edward F. Green; Benjamin J. Binder; James M. Osborne (Nat. Comput. Sci., 2022)

Multiscale modelling of desquamation in the interfollicular epidermis. - Claire Miller; Edmund J. Crampin; James M. Osborne (PLoS Comput. Biol., 2022)

Editorial: Do individuals matter? - Individual-based versus population-based models applied to biology and health. - Ivo Siekmann; James M. Osborne (Frontiers Appl. Math. Stat., 2023)

Mathematical models of developmental vascular remodelling: A review. - Jessica R. Crawshaw; Jennifer A. Flegg; Miguel O. Bernabeu; James M. Osborne (PLoS Comput. Biol., 2023)

Spatial information allows inference of the prevalence of direct cell-to-cell viral infection. - Thomas Williams; James M. McCaw; James M. Osborne (PLoS Comput. Biol., 2024)

Advancements in multicellular simulations. - Domenic P. J. Germano; James M. Osborne (Nat. Comput. Sci., 2024)