A new version of the RDP (Ribosomal Database Project). - Bonnie L. Maidak; James R. Cole; Charles T. Parker Jr.; George M. Garrity; Niels Larsen; Bing Li; Timothy G. Lilburn; Michael J. McCaughey; Gary J. Olsen; Ross A. Overbeek; Sakti Pramanik; Thomas M. Schmidt; et al. (Nucleic Acids Res., 1999)

The RDP (Ribosomal Database Project) continues. - Bonnie L. Maidak; James R. Cole; Timothy G. Lilburn; Charles T. Parker Jr.; Paul Saxman; Jason M. Stredwick; George M. Garrity; Bing Li; Gary J. Olsen; Sakti Pramanik; Thomas M. Schmidt; James M. Tiedje (Nucleic Acids Res., 2000)

The RDP-II (Ribosomal Database Project). - Bonnie L. Maidak; James R. Cole; Timothy G. Lilburn; Charles T. Parker Jr.; Paul Saxman; Ryan J. Farris; George M. Garrity; Gary J. Olsen; Thomas M. Schmidt; James M. Tiedje (Nucleic Acids Res., 2001)

The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. - James R. Cole; Benli Chai; Terry L. Marsh; Ryan J. Farris; Qiong Wang; S. A. Kulam; S. Chandra; Donna M. McGarrell; Thomas M. Schmidt; George M. Garrity; James M. Tiedje (Nucleic Acids Res., 2003)

BSD: the Biodegradative Strain Database. - John W. Urbance; James R. Cole; Paul Saxman; James M. Tiedje (Nucleic Acids Res., 2003)

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. - James R. Cole; Benli Chai; Ryan J. Farris; Qiong Wang; S. A. Kulam; Donna M. McGarrell; George M. Garrity; James M. Tiedje (Nucleic Acids Res., 2005)

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. - James R. Cole; Benli Chai; Ryan J. Farris; Qiong Wang; A. S. Kulam-Syed-Mohideen; Donna M. McGarrell; A. M. Bandela; E. Cardenas; George M. Garrity; James M. Tiedje (Nucleic Acids Res., 2007)

BEsTRF: a tool for optimal resolution of terminal-restriction fragment length polymorphism analysis based on user-defined primer-enzyme-sequence databases. - Blaz Stres; James M. Tiedje; Bostjan Murovec (Bioinform., 2009)

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. - James R. Cole; Qiong Wang; E. Cardenas; Jordan A. Fish; Benli Chai; Ryan J. Farris; A. S. Kulam-Syed-Mohideen; Donna M. McGarrell; Terry L. Marsh; George M. Garrity; James M. Tiedje (Nucleic Acids Res., 2009)

DNA encoding for an efficient 'Omics processing. - Bostjan Murovec; James M. Tiedje; Blaz Stres (Comput. Methods Programs Biomed., 2010)

Workshop: Graph compression approaches in assembly. - Jason Pell; Arend Hintze; Rosangela Canino-Koning; Adina Howe; James M. Tiedje; C. Titus Brown (ICCABS, 2012)

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs. - Jason Pell; Arend Hintze; Rosangela Canino-Koning; Adina Howe; James M. Tiedje; C. Titus Brown (Proc. Natl. Acad. Sci. USA, 2012)

Ribosomal Database Project: data and tools for high throughput rRNA analysis. - James R. Cole; Qiong Wang; Jordan A. Fish; Benli Chai; Donna M. McGarrell; Yanni Sun; C. Titus Brown; Andrea Porras-Alfaro; Cheryl R. Kuske; James M. Tiedje (Nucleic Acids Res., 2014)

ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database. - Ying Yang; Xiaotao Jiang; Benli Chai; Liping Ma; Bing Li; Anni Zhang; James R. Cole; James M. Tiedje; Tong Zhang (Bioinform., 2016)

ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes. - Xiaole Yin; Xiaotao Jiang; Benli Chai; Liguan Li; Ying Yang; James R. Cole; James M. Tiedje; Tong Zhang (Bioinform., 2018)

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level. - Luis Miguel Rodriguez-Rojas; Santosh Gunturu; William T. Harvey; Ramon Rosselló-Mora; James M. Tiedje; James R. Cole; Konstantinos T. Konstantinidis (Nucleic Acids Res., 2018)