Object oriented programming languages for developing simulation-related software. - Timothy Thomasma; James Madsen (WSC, 1990)

CAVE visualization of the IceCube neutrino detector. - Ross Tredinnick; James Vanderheiden; Clayton Suplinski; James Madsen (VR, 2014)

The IceProd framework: Distributed data processing for the IceCube neutrino observatory. - Mark G. Aartsen; Rasha U. Abbasi; Markus Ackermann 003; Jenni Adams; Juan Antonio Aguilar Sánchez; Markus Ahlers; David Altmann; Carlos A. Argüelles Delgado; Jan Auffenberg; Xinhua Bai; Michael F. Baker; Steven W. Barwick; et al. (J. Parallel Distributed Comput., 2015)

Cancer Detection at your Fingertips: Smartphone-Enabled DNA Testing. - Robert Turner; James Madsen; Pedro David Simon Herrera; John Wallace; Jonathan Madrigal; Juan Pablo Hinestrosa; Irina Dobrovolskaia; Rajaram Krishnan (EMBC, 2018)