Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment. - James O. Wrabl; Nick V. Grishin (J. Comput. Biol., 2008)

Investigating Homology between Proteins using Energetic Profiles. - James O. Wrabl; Vincent J. Hilser (PLoS Comput. Biol., 2010)

A Horizontal Alignment Tool for Numerical Trend Discovery in Sequence Data: Application to Protein Hydropathy. - Omar Hadzipasic; James O. Wrabl; Vincent J. Hilser (PLoS Comput. Biol., 2013)

Parallel Computation of Conformational Stability for CD4+ T-cell Epitope Prediction. - Avik Bhattacharya; James O. Wrabl; Samuel J. Landry; Ramgopal R. Mettu (BIBM, 2023)