A geometric database for gene expression data. - Joe D. Warren; Tao Ju 001; Gregor Eichele; Christina Thaller; Wah Chiu; James P. Carson (Symposium on Geometry Processing, 2003)

Landmark-Driven, Atlas-Based Segmentation of Mouse Brain Tissue Images Containing Gene Expression Data. - Ioannis A. Kakadiaris; Musodiq Bello; Shiva Arunachalam; Wei Kang; Tao Ju 001; Joe D. Warren; James P. Carson; Wah Chiu; Christina Thaller; Gregor Eichele (MICCAI (1), 2004)

Data Mining in situ Gene Expression Patterns at Cellular Resolution. - James P. Carson; Tao Ju 001; Christina Thaller; Musodiq Bello; Joe D. Warren; Gregor Eichele; Wah Chiu (CSB Workshops, 2005)

Data Mining in situ Gene Expression Patterns at Cellular Resolution. - James P. Carson; Christina Thaller; Musodiq Bello; Wah Chiu; Tao Ju 001; Joe D. Warren; Ioannis A. Kakadiaris; Gregor Eichele (CSB Workshops, 2005)

Hybrid Segmentation Framework for Tissue Images Containing Gene Expression Data. - Musodiq Bello; Tao Ju 001; Joe D. Warren; James P. Carson; Wah Chiu; Christina Thaller; Gregor Eichele; Ioannis A. Kakadiaris (MICCAI, 2005)

A Digital Atlas to Characterize the Mouse Brain Transcriptome. - James P. Carson; Tao Ju 001; Hui-Chen Lu; Christina Thaller; Mei Xu; Sarah L. Pallas; Michael C. Crair; Joe D. Warren; Wah Chiu; Gregor Eichele (PLoS Comput. Biol., 2005)

Building 3D surface networks from 2D curve networks with application to anatomical modeling. - Tao Ju 001; Joe D. Warren; James P. Carson; Gregor Eichele; Christina Thaller; Wah Chiu; Musodiq Bello; Ioannis A. Kakadiaris (Vis. Comput., 2005)

Learning-Based Segmentation Framework for Tissue Images Containing Gene Expression Data. - Musodiq Bello; Tao Ju 001; James P. Carson; Joe D. Warren; Wah Chiu; Ioannis A. Kakadiaris (IEEE Trans. Medical Imaging, 2007)

Automatic identification and truncation of boundary outlets in complex imaging-derived biomedical geometries. - Xiangmin Jiao; Daniel R. Einstein; Vladimir Dyedov; James P. Carson (Medical Biol. Eng. Comput., 2009)

High resolution lung airway cast segmentation with proper topology suitable for computational fluid dynamic simulations. - James P. Carson; Daniel R. Einstein; Kevin R. Minard; Michelle V. Fanucchi; Christopher D. Wallis; Richard A. Corley (Comput. Medical Imaging Graph., 2010)

Landmark/image-based deformable registration of gene expression data. - Uday Kurkure; Yen H. Le; Nikos Paragios; James P. Carson; Tao Ju 001; Ioannis A. Kakadiaris (CVPR, 2011)

Lossless 3-D reconstruction and registration of semi-quantitative gene expression data in the mouse brain. - Matthew A. Enlow; Tao Ju 001; Ioannis A. Kakadiaris; James P. Carson (EMBC, 2011)

Markov Random Field-based fitting of a subdivision-based geometric atlas. - Uday Kurkure; Yen H. Le; Nikos Paragios; Tao Ju 001; James P. Carson; Ioannis A. Kakadiaris (ICCV, 2011)

Velo and REXAN - Integrated data management and high speed analysis for experimental facilities. - Kerstin Kleese van Dam; James P. Carson; Abigail L. Corrigan; Daniel R. Einstein; Zoe Guillen; Brandi Heath; Andrew P. Kuprat; Ingela Lanekoff; Carina Lansing; Julia Laskin; Dongsheng Li; Yan Liu 001; et al. (eScience, 2012)

Detecting distance between injected microspheres and target tumor via 3D reconstruction of tissue sections. - James P. Carson; Andrew P. Kuprat; Sean M. Colby; Cassi A. Davis; Christopher A. Basciano; Kevin Greene; John Feo; Andrew Kennedy (EMBC, 2012)

Visualization of high resolution spatial mass spectrometric data during acquisition. - Mathew Thomas; Brandi S. Heath; Julia Laskin; Dongsheng Li; Ellen Liu; Katrina Hui; Andrew P. Kuprat; Kerstin Kleese van Dam; James P. Carson (EMBC, 2012)

Similarity-Based Appearance-Prior for Fitting a Subdivision Mesh in Gene Expression Images. - Yen H. Le; Uday Kurkure; Nikos Paragios; Tao Ju 001; James P. Carson; Ioannis A. Kakadiaris (MICCAI (1), 2012)

A bidirectional coupling procedure applied to multiscale respiratory modeling. - Andrew P. Kuprat; Senthil Kabilan; James P. Carson; Richard A. Corley; Daniel R. Einstein (J. Comput. Phys., 2013)

Automated, Foot-Bone Registration Using Subdivision-Embedded Atlases for Spatial Mapping of Bone Mineral Density. - Lu Liu 012; Paul K. Commean; Charles Hildebolt; David R. Sinacore; Fred W. Prior; James P. Carson; Ioannis A. Kakadiaris; Tao Ju 001 (J. Digit. Imaging, 2013)

3D imaging of microbial biofilms: Integration of synchrotron imaging and an interactive visualization interface. - Mathew Thomas; Matthew J. Marshall; Erin A. Miller; Andrew P. Kuprat; Kerstin Kleese van Dam; James P. Carson (EMBC, 2014)

Automated measurement of heterogeneity in CT images of healthy and diseased rat lungs using variogram analysis of an octree decomposition. - Richard E. Jacob; James P. Carson (BMC Medical Imaging, 2014)

A Digital Atlas of Ion Channel Expression Patterns in the Two-Week-Old Rat Brain. - Volodymyr Shcherbatyy; James P. Carson; Murat Yaylaoglu; Katharina Jäckle; Frauke Grabbe; Maren Brockmeyer; Halenur Yavuz; Gregor Eichele (Neuroinformatics, 2015)

A chicken embryo cardiac outflow tract atlas for registering changes due to abnormal blood flow. - James P. Carson; Monique Y. Rennie; Michael Danilchik; Kent L. Thornburg; Sandra Rugonyi (EMBC, 2016)

brainlife.io: A decentralized and open source cloud platform to support neuroscience research. - Soichi Hayashi; Bradley Caron; Anibal Sólon Heinsfeld; Sophia Vinci-Booher; Brent C. McPherson; Daniel N. Bullock; Giulia Berto; J. Guiomar Niso; Sandra Hanekamp; Daniel Levitas; Lindsey Kitchell; Josiah Leong; et al. (CoRR, 2023)