RVboost: RNA-seq variants prioritization using a boosting method. - Chen Wang 001; Jaime I. Dávila; Saurabh Baheti; Aditya Bhagwate; Xue Wang; Jean-Pierre A. Kocher; Susan L. Slager; Andrew L. Feldman; Anne J. Novak; James R. Cerhan; E. Aubrey Thompson; Yan W. Asmann (Bioinform., 2014)

PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data. - Chen Wang 001; Jared Evans; Aditya Bhagwate; Naresh Prodduturi; Vivekananda Sarangi; Mridu Middha; Hugues Sicotte; Peter T. Vedell; Steven N. Hart; Gavin R. Oliver; Jean-Pierre A. Kocher; Matthew J. Maurer; et al. (Bioinform., 2014)

Computational drug repurposing based on electronic health records: a scoping review. - Nansu Zong; Andrew Wen; Sungrim Moon; Sunyang Fu; Liwei Wang 010; Yiqing Zhao; Yue Yu; Ming Huang 006; Yanshan Wang; Gang Zheng; Michelle M. Mielke; James R. Cerhan; et al. (npj Digit. Medicine, 2022)

Evaluation of GPT-3 for Anti-Cancer Drug Sensitivity Prediction. - Shaika Chowdhury; Sivaraman Rajaganapathy; Lichao Sun; James R. Cerhan; Nansu Zong (CoRR, 2023)

Stratifying heart failure patients with graph neural network and transformer using Electronic Health Records to optimize drug response prediction. - Shaika Chowdhury; Yongbin Chen; Pengyang Li; Sivaraman Rajaganapathy; Andrew Wen; Xiao Ma 019; Qiying Dai; Yue Yu; Sunyang Fu; Xiaoqian Jiang; Zhe He 001; Sunghwan Sohn; et al. (J. Am. Medical Informatics Assoc., 2024)

Advancing efficacy prediction for electronic health records based emulated trials in repurposing heart failure therapies. - Nansu Zong; Shaika Chowdhury; Shibo Zhou; Sivaraman Rajaganapathy; Yue Yu; Liewei Wang; Qiying Dai; Pengyang Li; Xiaoke Liu; Suzette J. Bielinski; Jun Chen; Yongbin Chen; et al. (npj Digit. Medicine, 2025)

LLM-Match: An Open-Sourced Patient Matching Model Based on Large Language Models and Retrieval-Augmented Generation. - Xiaodi Li; Shaika Chowdhury; Chung-Il Wi; Maria Vassilaki; Xiaoke Liu; Terence T. Sio; Owen Garrick; Young J. Juhn; James R. Cerhan; Cui Tao; Nansu Zong (CoRR, 2025)