Molecular Diagnostics LIMS Functions in an Anatomic Pathology LIMS Environment: Experience and Challenges (A Case Study). - James R. Davie; James H. Harrison; Jeffrey A. Kant (AMIA, 2001)

TransformerChrome: Transformer-based Model for Prediction of Gene Expression from Histone Modifications. - Muhammad Tahir; Shehroz Khan 001; James R. Davie; Soichiro Yamanaka; Ahmed Ashraf 001 (Canadian AI, 2024)

Artificial intelligence and deep learning algorithms for epigenetic sequence analysis: A review for epigeneticists and AI experts. - Muhammad Tahir; Mahboobeh Norouzi; Shehroz S. Khan; James R. Davie; Soichiro Yamanaka; Ahmed Ashraf 001 (Comput. Biol. Medicine, 2024)

LOCO-EPI: Leave-one-chromosome-out (LOCO) as a benchmarking paradigm for deep learning based prediction of enhancer-promoter interactions. - Muhammad Tahir; Shehroz S. Khan; James R. Davie; Soichiro Yamanaka; Ahmed Ashraf 001 (Appl. Intell., 2025)