Figaro: a novel statistical method for vector sequence removal. - James Robert White; Michael Roberts; James A. Yorke; Mihai Pop (Bioinform., 2008)

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. - James Robert White; Niranjan Nagarajan; Mihai Pop (PLoS Comput. Biol., 2009)

Alignment and clustering of phylogenetic markers - implications for microbial diversity studies. - James Robert White; Saket Navlakha; Niranjan Nagarajan; Mohammadreza Ghodsi; Carl Kingsford; Mihai Pop (BMC Bioinform., 2010)

Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. - Saket Navlakha; James Robert White; Niranjan Nagarajan; Mihai Pop; Carl Kingsford (J. Comput. Biol., 2010)

Novel Methods for Metagenomic Analysis. - James Robert White (2010)

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing. - Samuel V. Angiuoli; Malcolm Matalka; Aaron Gussman; Kevin Galens; Mahesh Vangala; David R. Riley 002; Cesar Arze; James Robert White; Owen White; W. Florian Fricke (BMC Bioinform., 2011)

Bacteria-Human Somatic Cell Lateral Gene Transfer Is Enriched in Cancer Samples. - David R. Riley 002; Karsten B. Sieber; Kelly M. Robinson; James Robert White; Ashwinkumar Ganesan; Syrus Nourbakhsh; Julie C. Dunning Hotopp (PLoS Comput. Biol., 2013)